Modeling development of tertiary lymphoid structures in pulmonary tuberculosis by 3D profiling and trajectory analysis
- GENERAL INFORMATION
- ASSOCIATED PUBLICATION
- RECOMMENDED CITATION
- USEFUL LINKS
- ACCESS THE DATASET
- FILE ORGANIZATION
- REPOSITORY LINKS
- FILE LIST
- ADDITIONAL NOTES/COMMENTS
Modeling development of tertiary lymphoid structures in pulmonary tuberculosis by 3D profiling and trajectory analysis
Authors: Emmanuel C. Ogbonna*, Soheil R. Talemi*, Zoltan Maliga, Ziyuan Zhao, Clarence Yapp, Shishir Pant, Yi Daniel Lu, Jeremy Muhlich, Andréanne Gagné, Amanda J. Martinot, Shannon Coy, Sandro Santagata, Angela Shih, Isaac H. Solomon, Threnesan Naidoo, Bree B. Aldridge, Adrie Steyn, Peter K. Sorger†
*Authors contributed equally to this article.
†Corresponding.
Please cite this data as the following:
Ogbonna and Rastgou Talemi (2026). Modeling development of tertiary lymphoid structures in pulmonary tuberculosis by 3D profiling and trajectory analysis. biorxiv https://doi.org/10.64898/2026.XX.XX.725201 {journal/biorxv}
Relevant links:
- Publication DOI: doi.org/MY-PAPER-DOI
- Associated GitHub Repository: https://github.com/labsyspharm/TB-3D-TLS-2026/
- To view an archived record of this repository: https://zenodo.org/10.5281/zenodo.19616347
- To view the image data online, visit: My-ATLAS-PAGE
- Associated documentation website: MY-PROJECT-WEBSITE
- DOI of other publications that use the data: <If this data is being reused from a past publication, include DOI and APA citation>
Each file follows the following naming convention:
Each folder corresponds to a patient sample (N).
| File Type | Description | Location |
|---|---|---|
| N.ome.tif | Stitched multiplex CyCIF image pyramid in ome.tif format | AWS |
| N.ome.tif | Hematoxylin and Eosin stained image of adjacent FFPE tissue section | AWS |
| N-cellRing. ome.tif | Segmentation mask image | AWS |
| N.csv | single-cell feature table, including intensity data for all channels | AWS |
| N.fastq | GeoMx Sequencing data | GEO |
| N.ims | Stitched and registered 3D multiplexed CyCIF image in .ims format | AWS |
Full-resolution CyCIF images, single cell segmentation masks, and cell count tables will be available via AWS. You will need the following bucket name:
AWS BUCKET NAME
For general instructions on how to download data from AWS, see: https://zenodo.org/records/10223574
If you experience issues accessing the above AWS S3 buckets, email tissue-atlas(at)hms.harvard.edu with the subject line "bucketname: Data Access".
GeoMx gene expression data is available via the Gene Expression Omnibus (GEO): Accession number: GSE318959
Image data generated during this study are available on the Gates TB Data Portal (https://idp.tissue-atlas.org/). For access, email tissue-atlas(at)hms.harvard.edu with the subject line "Gates TB Data Portal: Data Access".
| Patient ID | File Name | Location | File Size (GB) | Antibody Panel |
|---|---|---|---|---|
| Patient1_B4 | LSP24522.ome.tif | AWS | 222.37 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24525.ome.tif | AWS | 202.51 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24528.ome.tif | AWS | 202.57 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24531.ome.tif | AWS | 225.94 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24534.ome.tif | AWS | 220.79 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24537.ome.tif | AWS | 204.92 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24540.ome.tif | AWS | 191.57 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24543.ome.tif | AWS | 213.09 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24546.ome.tif | AWS | 205.37 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24549.ome.tif | AWS | 212.91 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24552.ome.tif | AWS | 199.53 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24555.ome.tif | AWS | 212.91 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24558.ome.tif | AWS | 221.39 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24561.ome.tif | AWS | 217.61 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24564.ome.tif | AWS | 214.29 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24567.ome.tif | AWS | 196.63 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24570.ome.tif | AWS | 207.13 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24573.ome.tif | AWS | 226.64 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24576.ome.tif | AWS | 230.50 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24579.ome.tif | AWS | 205.65 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24582.ome.tif | AWS | 226.38 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24585.ome.tif | AWS | 199.04 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24588.ome.tif | AWS | 215.38 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24591.ome.tif | AWS | 200.37 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24594.ome.tif | AWS | 217.11 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24597.ome.tif | AWS | 199.92 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24600.ome.tif | AWS | 202.57 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24603.ome.tif | AWS | 219.74 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24606.ome.tif | AWS | 219.70 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24609.ome.tif | AWS | 226.05 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24612.ome.tif | AWS | 197.44 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24615.ome.tif | AWS | 222.30 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24618.ome.tif | AWS | 197.84 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24621.ome.tif | AWS | 198.85 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24624.ome.tif | AWS | 198.49 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24627.ome.tif | AWS | 216.52 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24630.ome.tif | AWS | 210.79 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24633.ome.tif | AWS | 193.94 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24636.ome.tif | AWS | 203.49 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24639.ome.tif | AWS | 185.99 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B5 | LSP16101.ome.tif | AWS | 214.00 | ORION imaging panel |
| Patient1_B5 | LSP16102_B5_Scan1.ome.tiff | AWS | 15.30 | p17_e6_TB_Granulomas_GeoMx IF |
| Patient1_B5 | LSP16102.ome.tif | AWS | 19.20 | EO8_p17e25_PostGeoMx_CyCIF |
| Patient1_B5 | LSP16104.ome.tif | AWS | 147.00 | EO4_TB_MDSC_rerun |
| Patient1_B5 | LSP16105.ome.tif | AWS | 164.00 | EO5_B5 and AHRI samples |
| Patient2 | LSP16031.ome.tif | AWS | 11.30 | p17_e6_TB_Granulomas_GeoMx IF |
| Patient ID | File Name | Location | File Size (GB) |
|---|---|---|---|
| Patient1_B4 | LSP24521.ome.tif | AWS | 12.15 |
| Patient1_B4 | LSP24524.ome.tif | AWS | 14.00 |
| Patient1_B4 | LSP24527.ome.tif | AWS | 13.48 |
| Patient1_B4 | LSP24530.ome.tif | AWS | 12.78 |
| Patient1_B4 | LSP24533.ome.tif | AWS | 13.78 |
| Patient1_B4 | LSP24536.ome.tif | AWS | 16.61 |
| Patient1_B4 | LSP24539.ome.tif | AWS | 16.72 |
| Patient1_B4 | LSP24542.ome.tif | AWS | 16.42 |
| Patient1_B4 | LSP24545.ome.tif | AWS | 18.33 |
| Patient1_B4 | LSP24548.ome.tif | AWS | 13.97 |
| Patient1_B4 | LSP24551.ome.tif | AWS | 12.54 |
| Patient1_B4 | LSP24554.ome.tif | AWS | 13.91 |
| Patient1_B4 | LSP24557.ome.tif | AWS | 13.83 |
| Patient1_B4 | LSP24560.ome.tif | AWS | 13.21 |
| Patient1_B4 | LSP24563.ome.tif | AWS | 13.25 |
| Patient1_B4 | LSP24566.ome.tif | AWS | 13.93 |
| Patient1_B4 | LSP24569.ome.tif | AWS | 13.46 |
| Patient1_B4 | LSP24572.ome.tif | AWS | 14.41 |
| Patient1_B4 | LSP24575.ome.tif | AWS | 13.23 |
| Patient1_B4 | LSP24578.ome.tif | AWS | 13.43 |
| Patient1_B4 | LSP24581.ome.tif | AWS | 13.23 |
| Patient1_B4 | LSP24584.ome.tif | AWS | 12.64 |
| Patient1_B4 | LSP24587.ome.tif | AWS | 13.73 |
| Patient1_B4 | LSP24590.ome.tif | AWS | 13.01 |
| Patient1_B4 | LSP24593.ome.tif | AWS | 12.73 |
| Patient1_B4 | LSP24596.ome.tif | AWS | 13.72 |
| Patient1_B4 | LSP24599.ome.tif | AWS | 17.65 |
| Patient1_B4 | LSP24602.ome.tif | AWS | 11.89 |
| Patient1_B4 | LSP24605.ome.tif | AWS | 16.95 |
| Patient1_B4 | LSP24608.ome.tif | AWS | 14.84 |
| Patient1_B4 | LSP24611.ome.tif | AWS | 13.68 |
| Patient1_B4 | LSP24614.ome.tif | AWS | 13.78 |
| Patient1_B4 | LSP24617.ome.tif | AWS | 13.49 |
| Patient1_B4 | LSP24620.ome.tif | AWS | 14.22 |
| Patient1_B4 | LSP24623.ome.tif | AWS | 13.12 |
| Patient1_B4 | LSP24626.ome.tif | AWS | 13.01 |
| Patient1_B4 | LSP24629.ome.tif | AWS | 13.53 |
| Patient1_B4 | LSP24632.ome.tif | AWS | 12.78 |
| Patient1_B4 | LSP24635.ome.tif | AWS | 13.39 |
| Patient1_B4 | LSP24638.ome.tif | AWS | 11.72 |
| Patient1_B5 | LSP16103.ome.tif | AWS | 0.84 |
| Patient1_B5 | LSP16106.ome.tiff | AWS | 19.70 |
| Patient ID | File Name | File Size (GB) | Antibody Panel |
|---|---|---|---|
| Patient1_B4 | LSP24522.ome.tif | 17.39 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24525.ome.tif | 16.20 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24528.ome.tif | 16.20 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24531.ome.tif | 17.39 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24534.ome.tif | 17.39 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24537.ome.tif | 16.73 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24540.ome.tif | 14.93 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24543.ome.tif | 16.73 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24546.ome.tif | 16.20 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24549.ome.tif | 17.39 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24552.ome.tif | 16.20 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24555.ome.tif | 16.84 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24558.ome.tif | 17.39 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24561.ome.tif | 17.39 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24564.ome.tif | 16.84 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24567.ome.tif | 15.57 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24570.ome.tif | 16.84 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24573.ome.tif | 18.05 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24576.ome.tif | 18.05 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24579.ome.tif | 16.20 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24582.ome.tif | 18.05 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24585.ome.tif | 16.20 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24588.ome.tif | 17.39 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24591.ome.tif | 15.57 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24594.ome.tif | 16.73 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24597.ome.tif | 16.20 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24600.ome.tif | 16.84 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24603.ome.tif | 17.39 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24606.ome.tif | 17.39 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24609.ome.tif | 18.05 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24612.ome.tif | 16.08 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24615.ome.tif | 18.18 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24618.ome.tif | 16.20 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24621.ome.tif | 16.20 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24624.ome.tif | 16.20 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24627.ome.tif | 17.39 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24630.ome.tif | 16.73 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24633.ome.tif | 15.57 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24636.ome.tif | 16.20 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24639.ome.tif | 14.93 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B5 | LSP16101.ome.tif | 22.30 | ORION imaging panel |
| Patient1_B5 | LSP16102.ome.tif | 0.316 | EO8_p17e25_PostGeoMx_CyCIF |
| Patient1_B5 | LSP16104.ome.tif | 6.83 | EO4_TB_MDSC_rerun |
| Patient1_B5 | LSP16105.ome.tif | 7.16 | EO5_B5 and AHRI samples |
| Patient ID | File Name | File Size (GB) | Antibody Panel |
|---|---|---|---|
| Patient1_B4 | LSP24522.csv | 1.16 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24525.csv | 1.20 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24528.csv | 1.16 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24531.csv | 1.31 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24534.csv | 1.18 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24537.csv | 1.19 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24540.csv | 1.21 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24543.csv | 1.21 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24546.csv | 1.23 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24549.csv | 1.19 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24552.csv | 1.22 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24555.csv | 1.18 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24558.csv | 1.20 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24561.csv | 1.14 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24564.csv | 1.17 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24567.csv | 1.16 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24570.csv | 1.30 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24573.csv | 1.13 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24576.csv | 1.13 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24579.csv | 1.10 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24582.csv | 1.16 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24585.csv | 1.11 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24588.csv | 1.13 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24591.csv | 1.11 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24594.csv | 1.14 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24597.csv | 1.07 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24600.csv | 1.10 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24603.csv | 1.13 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24606.csv | 1.08 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24609.csv | 1.11 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24612.csv | 0.99 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24615.csv | 1.20 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24618.csv | 0.96 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24621.csv | 0.98 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24624.csv | 0.96 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24627.csv | 1.00 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24630.csv | 0.98 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24633.csv | 0.94 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24636.csv | 1.00 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B4 | LSP24639.csv | 0.92 | p17e16_EO7_B4_3D IMAGE RECONSTRUCTION |
| Patient1_B5 | LSP16101.csv | 0.51 | ORION imaging panel |
| Patient1_B5 | LSP16102.csv | 1.67 | EO8_p17e25_PostGeoMx_CyCIF |
| Patient1_B5 | LSP16104.csv | 1.71 | EO4_TB_MDSC_rerun |
| Patient1_B5 | LSP16105.csv | 2.24 | EO5_B5 and AHRI samples |
| Patient ID | File Name | Location | File Size (GB) |
|---|---|---|---|
| Patient1_B4 | Patient1_B4_3D_TLS.ims | AWS | 8640.00 |
| Patient1_B4 | output1.ims | AWS | 124.00 |
| Patient1_B4 | output2.ims | AWS | 72.70 |
| Patient1_B4 | output4.ims | AWS | 65.60 |
| Patient1_B4 | output5.ims | AWS | 142.00 |
| Patient1_B4 | output6.ims | AWS | 65.30 |
Please contact tissue-atlas(at)hms.harvard.edu if you have any questions related to the data.
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Emmanuel Ogbonna — GitHub: https://github.com/eddyyoung008
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Soheil Rastgou Talemi — GitHub: https://github.com/RTSoheil