Skip to content

Script overhaul of get_citations.pl, and accompanying updates in all files in Genus/species/gene_functions/ - #130

Merged
StevenCannon-USDA merged 3 commits into
mainfrom
fixes_2025-07-22
Jul 28, 2025
Merged

Script overhaul of get_citations.pl, and accompanying updates in all files in Genus/species/gene_functions/#130
StevenCannon-USDA merged 3 commits into
mainfrom
fixes_2025-07-22

Conversation

@StevenCannon-USDA

Copy link
Copy Markdown
Collaborator

The script overhaul was to better extract DOI and PMID strings from the PubMed and Crossref services, and to merge elements relative to unique citations. Specifically, if a DOI or PMID is missing from some gene record but present in another, use all available information. And check and update DOI and PMID against PubMed and Crossref services if there is a discrepancy with the human-curated input.

StevenCannon-USDA added 3 commits July 22, 2025 14:18
…ene_model_full_id to pissa.Feng_Chen_2024.yml
…d and Crossref services, and to merge elements relative to unique citations.
@StevenCannon-USDA
StevenCannon-USDA merged commit 976a093 into main Jul 28, 2025
2 checks passed
@jd-campbell
jd-campbell deleted the fixes_2025-07-22 branch December 23, 2025 19:48
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant