Issues

• Need for a new release and add tar as dependency

  lgmgeo/AnnotSV#354 · Filter by author manascripts opened on Oct 5, 2026
  5

• Issue when running multiple samples in parallel

  lgmgeo/AnnotSV#353 · Filter by author Nymeria8 opened on Sep 14, 2026
  1

• README clarification needed

  lgmgeo/AnnotSV#352 · Filter by author tohsumi-baylor-genetics opened on Sep 11, 2026
  3

• Two different BNDs with the same breakpoint only get reported once.

  lgmgeo/AnnotSV#351 · Filter by author awgymer opened on Aug 25, 2026
  1

• Reciprocal INV/BND breakend handling results in duplicates

  lgmgeo/AnnotSV#350 · Filter by author darci-giac opened on Aug 7, 2026
  1

• Inconsistent number of columns between header and variant records in AnnotSV output

  lgmgeo/AnnotSV#348 · Filter by author Junyanzhong opened on Aug 5, 2026
  1

• Annotating BND events - INV and TRA

  lgmgeo/AnnotSV#346 · Filter by author vandrioletti-art opened on Jul 13, 2026
  4

• Variantconvert installed at runtime even if it was successfully installed during the initial build or a previous run

  lgmgeo/AnnotSV#345 · Filter by author hkeward opened on Jun 11, 2026
  2

• AnnotSV ranking criteria: missing closing paren in 2B (loss) explanation

  lgmgeo/AnnotSV#341 · Filter by author hkeward opened on Jun 8, 2026
  2

• BUG in INSTALL_annotations.sh

  lgmgeo/AnnotSV#340 · Filter by author Imoteph opened on Jun 8, 2026
  5

• List element in quotes followed by ""Kaposis" instead of space

  lgmgeo/AnnotSV#338 · Filter by author GACGAMA opened on May 21, 2026
  5

• Split VCF INFO fields from the -SVinputInfo option

  new functionality requested
  lgmgeo/AnnotSV#331 · Filter by author thomasguignard opened on Apr 17, 2026
  1

• PhenoGenius not being installed when using bioconda

  bugDocker/Singularity/BiocondaHPO
  lgmgeo/AnnotSV#323 · Filter by author GACGAMA opened on Mar 6, 2026
  9

• Exomiser Network unreachable

  bughelp wantedHPO
  lgmgeo/AnnotSV#306 · Filter by author abrusell opened on Nov 10, 2025
  25

• Major vs minor Annotations_* difference

  documentationenhancementhelp wanted
  lgmgeo/AnnotSV#305 · Filter by author Stikus opened on Oct 31, 2025
  20

• Invalid VCF according to VCF specification

  VariantConvertvcf output
  lgmgeo/AnnotSV#261 · Filter by author aligogon opened on Oct 9, 2024
  2

• AnnotSV BioConda Environment: Reference Issues For GRCh38

  bugDocker/Singularity/Biocondahelp wanted
  lgmgeo/AnnotSV#255 · Filter by author yr542 opened on Sep 6, 2024
  19

• vcf errors

  bugVariantConvert
  lgmgeo/AnnotSV#245 · Filter by author gevro opened on Jul 10, 2024
  1

• How to rank/prioritize inversions?

  ranking
  lgmgeo/AnnotSV#223 · Filter by author lgmgeo opened on Mar 21, 2024
  7

• Family-based filtering

  new functionality requestedSQL database integration
  lgmgeo/AnnotSV#205 · Filter by author paolomaccallini-hub opened on Dec 1, 2023
  1

• Conda (and container) version of AnnotSV runs into error when run with -hpo arg

  bugDocker/Singularity/Bioconda
  lgmgeo/AnnotSV#195 · Filter by author ManavalanG opened on Sep 6, 2023
  27

• AnnotSV Singularity on an HPC Error command not found

  Docker/Singularity/Bioconda
  lgmgeo/AnnotSV#184 · Filter by author yr542 opened on Jun 13, 2023
  24

• exomiser error occurs when submits multiple jobs

  enhancementHPO
  lgmgeo/AnnotSV#72 · Filter by author Jihoon-Yoon opened on Dec 7, 2021
  1

• Rank 2 always missing in ACMG_class column

  enhancementranking
  lgmgeo/AnnotSV#38 · Filter by author ManavalanG opened on Feb 4, 2021
  1

• AnnotSV implementation in Python

  enhancement
  lgmgeo/AnnotSV#23 · Filter by author lgmgeo opened on Aug 24, 2020
  6