SC2Spa: a deep learning based approach to map transcriptome to spatial origins at cellular resolution

Install

Install SC2Spa:

conda create -n SC2Spa python=3.9
conda activate SC2Spa
pip install SC2Spa

Analysis for the SC2Spa manuscript

The analysis for the SC2Spa manuscript can be found in this repository. The analysis and related data were also uploaded to Figshare and Zenodo.

Benchmarking and validation code

The benchmarking code, including scripts for cross-validation and cross-dataset validation, is available for download as CV_code.zip from: https://figshare.com/ndownloader/files/53089715

Many more to come!

We will update more on our Read the Docs page

News

2023/08/22

SC2Spa is now on BioRXiv! https://www.biorxiv.org/content/10.1101/2023.08.22.554277v1