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Fix BUSCO target #31

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Fix BUSCO target #31

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f19da9d
Fix BUSCO target
AdamStuckert May 6, 2019
888c7f0
Fix BUSCO
AdamStuckert May 6, 2019
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2 changes: 1 addition & 1 deletion oyster.mk
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Original file line number Diff line number Diff line change
Expand Up @@ -390,7 +390,7 @@ endif
${DIR}/reports/${RUNOUT}.busco.done:${DIR}/assemblies/${RUNOUT}.ORP.fasta
export BUSCO_CONFIG_FILE=${MAKEDIR}/software/config.ini
python $$(which run_BUSCO.py) -i ${DIR}/assemblies/${RUNOUT}.ORP.fasta -m transcriptome --cpu ${BUSCO_THREADS} -o ${RUNOUT}.ORP
mv run_${RUNOUT}* ${DIR}/reports/
mv run_${RUNOUT}.ORP ${DIR}/reports/
touch ${DIR}/reports/${RUNOUT}.busco.done

${DIR}/reports/transrate_${RUNOUT}/assemblies.csv:${DIR}/assemblies/${RUNOUT}.ORP.fasta ${DIR}/rcorr/${RUNOUT}.TRIM_1P.cor.fq ${DIR}/rcorr/${RUNOUT}.TRIM_2P.cor.fq
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