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@mahmoodlab

Mahmood Lab @ Harvard/MGB

AI for Pathology Image Analysis Lab @ HMS / BWH

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  1. CLAM CLAM Public

    Open source tools for computational pathology - Nature BME

    Python 1.3k 425

  2. TRIDENT TRIDENT Public

    Toolkit for large-scale whole-slide image processing.

    Python 232 36

  3. UNI UNI Public

    Pathology Foundation Model - Nature Medicine

    Jupyter Notebook 482 66

  4. TITAN TITAN Public

    Multimodal Whole Slide Foundation Model for Pathology

    Python 217 22

  5. CONCH CONCH Public

    Vision-Language Pathology Foundation Model - Nature Medicine

    Python 366 29

  6. HEST HEST Public

    Integrating histology and spatial transcriptomics - NeurIPS 2024

    Python 280 24

Repositories

Showing 10 of 32 repositories
  • TRIDENT Public

    Toolkit for large-scale whole-slide image processing.

    mahmoodlab/TRIDENT’s past year of commit activity
    Python 232 36 15 (1 issue needs help) 5 Updated Jun 2, 2025
  • Patho-Bench Public

    Standardized benchmark for computational pathology foundation models.

    mahmoodlab/Patho-Bench’s past year of commit activity
    Python 75 12 2 0 Updated May 27, 2025
  • HEST Public

    Integrating histology and spatial transcriptomics - NeurIPS 2024

    mahmoodlab/HEST’s past year of commit activity
    Python 280 24 14 1 Updated May 3, 2025
  • CLAM Public

    Open source tools for computational pathology - Nature BME

    mahmoodlab/CLAM’s past year of commit activity
    Python 1,335 GPL-3.0 425 32 9 Updated Apr 14, 2025
  • UNI Public

    Pathology Foundation Model - Nature Medicine

    mahmoodlab/UNI’s past year of commit activity
    Jupyter Notebook 482 66 23 2 Updated Mar 26, 2025
  • CONCH Public

    Vision-Language Pathology Foundation Model - Nature Medicine

    mahmoodlab/CONCH’s past year of commit activity
    Python 366 29 8 2 Updated Mar 26, 2025
  • TITAN Public

    Multimodal Whole Slide Foundation Model for Pathology

    mahmoodlab/TITAN’s past year of commit activity
    Python 217 22 2 0 Updated Mar 17, 2025
  • MMP Public

    Multimodal prototyping for cancer survival prediction - ICML 2024

    mahmoodlab/MMP’s past year of commit activity
    Jupyter Notebook 83 10 1 0 Updated Feb 22, 2025
  • PANTHER Public

    Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024

    mahmoodlab/PANTHER’s past year of commit activity
    Jupyter Notebook 132 15 0 0 Updated Feb 22, 2025
  • MADELEINE Public

    MADELEINE: multi-stain slide representation learning (ECCV'24)

    mahmoodlab/MADELEINE’s past year of commit activity
    Python 56 5 3 1 Updated Feb 18, 2025
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