Merge pull request pyiron#5 from pyiron/binder

Move mybinder configuration .binder

.binder/postBuild

@@ -0,0 +1,11 @@
+# install environment 
+mamba env update --name notebook --file environment.yml
+
+# move pyiron config to home directory 
+mv .binder/.pyiron .
+
+# import dataset
+bash .github/ci_support/import_dataset.sh
+
+# install nglview
+bash .github/ci_support/install_nglview.sh

.github/ci_support/build_notebooks.sh

@@ -2,8 +2,11 @@
 # pyiron config 
 python .github/ci_support/pyironconfig.py
 
-# install
-bash binder/postBuild
+# import dataset
+bash .github/ci_support/import_dataset.sh
+
+# install nglview
+bash .github/ci_support/install_nglview.sh
 
 # conda install papermill
 conda install -c conda-forge papermill

.github/ci_support/import_dataset.sh

@@ -0,0 +1,12 @@
+#!/bin/bash
+for ds in $(ls calculation/*.tar.gz); do 
+    cp ${ds} .
+    cp calculation/export.csv .
+    file=$(basename ${ds} .tar.gz)
+    python << EOF
+from pyiron_base import Project
+Project("calculation").unpack("${file}")
+EOF
+    rm $(basename ${ds})
+    rm export.csv
+done

.github/ci_support/install_nglview.sh

@@ -0,0 +1,9 @@
+#!/bin/bash
+
+# ngl view for jupyter
+jupyter nbextension install nglview --py --sys-prefix
+jupyter nbextension enable nglview --py --sys-prefix
+
+# ngl view for jupyter lab
+jupyter labextension install @jupyter-widgets/jupyterlab-manager --no-build
+jupyter labextension install nglview-js-widgets --minimize=False

.github/workflows/notebooks.yml

@@ -17,7 +17,7 @@ jobs:
       with:
         auto-update-conda: true
         python-version: 3.8
-        environment-file: binder/environment.yml
+        environment-file: environment.yml
         auto-activate-base: false
     - name: Tests
       shell: bash -l {0}