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@@ -71,144 +71,10 @@ jobs: | |
$env:COMPILER = "${{ matrix.compiler }}" | ||
$env:TASK = "${{ matrix.task }}" | ||
& "$env:GITHUB_WORKSPACE/.ci/test-windows.ps1" | ||
test-r-sanitizers: | ||
name: r-sanitizers (ubuntu-latest, R-devel, ${{ matrix.compiler }} ASAN/UBSAN) | ||
timeout-minutes: 60 | ||
runs-on: ubuntu-latest | ||
container: wch1/r-debug | ||
strategy: | ||
fail-fast: false | ||
matrix: | ||
include: | ||
- r_customization: san | ||
compiler: gcc | ||
- r_customization: csan | ||
compiler: clang | ||
steps: | ||
- name: Trust git cloning LightGBM | ||
run: | | ||
git config --global --add safe.directory "${GITHUB_WORKSPACE}" | ||
- name: Checkout repository | ||
uses: actions/checkout@v4 | ||
with: | ||
fetch-depth: 5 | ||
submodules: true | ||
- name: Install packages | ||
shell: bash | ||
run: | | ||
RDscript${{ matrix.r_customization }} -e "install.packages(c('R6', 'data.table', 'jsonlite', 'knitr', 'markdown', 'Matrix', 'RhpcBLASctl', 'testthat'), repos = 'https://cran.rstudio.com', Ncpus = parallel::detectCores())" | ||
sh build-cran-package.sh --r-executable=RD${{ matrix.r_customization }} | ||
RD${{ matrix.r_customization }} CMD INSTALL lightgbm_*.tar.gz || exit 1 | ||
- name: Run tests with sanitizers | ||
shell: bash | ||
run: | | ||
cd R-package/tests | ||
exit_code=0 | ||
RDscript${{ matrix.r_customization }} testthat.R >> tests.log 2>&1 || exit_code=-1 | ||
cat ./tests.log | ||
exit ${exit_code} | ||
test-r-extra-checks: | ||
name: r-package (${{ matrix.image }}, R-devel) | ||
timeout-minutes: 60 | ||
strategy: | ||
fail-fast: false | ||
matrix: | ||
# references: | ||
# * CRAN "additional checks": https://cran.r-project.org/web/checks/check_issue_kinds.html | ||
# * images: https://r-hub.github.io/containers/containers.html | ||
image: | ||
- clang16 | ||
- clang17 | ||
- clang18 | ||
- clang19 | ||
- gcc14 | ||
- intel | ||
- rchk | ||
runs-on: ubuntu-latest | ||
container: ghcr.io/r-hub/containers/${{ matrix.image }}:latest | ||
steps: | ||
- name: Checkout repository | ||
uses: actions/checkout@v4 | ||
with: | ||
fetch-depth: 5 | ||
submodules: true | ||
- name: Install pandoc | ||
uses: r-lib/actions/setup-pandoc@v2 | ||
- name: Install LaTeX | ||
shell: bash | ||
run: | | ||
if type -f apt 2>&1 > /dev/null; then | ||
apt-get update | ||
apt-get install --no-install-recommends -y \ | ||
devscripts \ | ||
texinfo \ | ||
texlive-latex-extra \ | ||
texlive-latex-recommended \ | ||
texlive-fonts-recommended \ | ||
texlive-fonts-extra \ | ||
tidy \ | ||
qpdf | ||
else | ||
yum update -y | ||
yum install -y \ | ||
devscripts \ | ||
qpdf \ | ||
texinfo \ | ||
texinfo-tex \ | ||
texlive-latex \ | ||
tidy | ||
fi | ||
- name: Install packages and run tests | ||
shell: bash | ||
run: | | ||
Rscript -e "install.packages(c('R6', 'data.table', 'jsonlite', 'knitr', 'markdown', 'Matrix', 'RhpcBLASctl'), repos = 'https://cran.rstudio.com', Ncpus = parallel::detectCores())" | ||
sh build-cran-package.sh | ||
# 'rchk' isn't run through 'R CMD check', use the approach documented at | ||
# https://r-hub.github.io/containers/local.html | ||
if [[ "${{ matrix.image }}" =~ "rchk" ]]; then | ||
r-check "$(pwd)" \ | ||
| tee ./rchk-logs.txt 2>&1 | ||
# the '-v' exceptions below are from R/rchk itself and not LightGBM: | ||
# https://github.com/kalibera/rchk/issues/22#issuecomment-656036156 | ||
if grep -E '\[PB\]|ERROR' ./rchk-logs.txt \ | ||
| grep -v 'too many states' \ | ||
> /dev/null; \ | ||
then | ||
echo "rchk found issues" | ||
exit 1 | ||
else | ||
echo "rchk did not find any issues" | ||
exit 0 | ||
fi | ||
fi | ||
# 'testthat' is not needed by 'rchk', so avoid installing it until here | ||
Rscript -e "install.packages('testthat', repos = 'https://cran.rstudio.com', Ncpus = parallel::detectCores())" | ||
if [[ "${{ matrix.image }}" =~ "clang" ]]; then | ||
# allowing the following NOTEs (produced by default in the clang images): | ||
# | ||
# * checking compilation flags used ... NOTE | ||
# Compilation used the following non-portable flag(s): | ||
# ‘-Wp,-D_FORTIFY_SOURCE=3’ | ||
# | ||
# even though CRAN itself sets that: | ||
# https://www.stats.ox.ac.uk/pub/bdr/Rconfig/r-devel-linux-x86_64-fedora-clang | ||
# | ||
declare -i allowed_notes=1 | ||
else | ||
declare -i allowed_notes=0 | ||
fi | ||
bash .ci/run-r-cmd-check.sh \ | ||
"$(echo lightgbm_$(head -1 VERSION.txt).tar.gz)" \ | ||
"${allowed_notes}" | ||
all-r-package-jobs-successful: | ||
all-r-revdepchecks-jobs-successful: | ||
if: always() | ||
runs-on: ubuntu-latest | ||
needs: [test, test-r-sanitizers, test-r-extra-checks] | ||
needs: [test] | ||
steps: | ||
- name: Note that all tests succeeded | ||
uses: re-actors/[email protected] | ||
|