Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Fix hpacker installation script #32

Open
wants to merge 3 commits into
base: main
Choose a base branch
from
Open

Fix hpacker installation script #32

wants to merge 3 commits into from
+8 −2

Conversation

thempel
Copy link
Collaborator

@thempel thempel commented Feb 20, 2025

Use -e for installing bioemu dependencies (same as setup.sh) to avoid overwriting existing editable installation with non-editable one.

@thempel thempel requested a review from sarahnlewis February 20, 2025 10:49
@github-actions GitHub Actions
Copy link

Summary

Summary
Generated on: 02/20/2025 - 11:02:03
Parser: Cobertura
Assemblies: 3
Classes: 19
Files: 19
Line coverage: 68.6% (1574 of 2294)
Covered lines: 1574
Uncovered lines: 720
Coverable lines: 2294
Total lines: 7638
Covered branches: 0
Total branches: 0
Method coverage: Feature is only available for sponsors

Coverage

src.bioemu - 84.6%
Name Line Branch
src.bioemu 84.6% ****
init.py
chemgraph.py 100%
convert_chemgraph.py 85%
denoiser.py 96.8%
get_embeds.py 96%
md_utils.py 98.3%
models.py 94.1%
run_hpacker.py 0%
sample.py 49.4%
sde_lib.py 84.3%
seq_io.py 100%
shortcuts.py 100%
sidechain_relax.py 87.2%
so3_sde.py 81%
structure_module.py 99%
utils.py 100%
src.bioemu.openfold.np - 44%
Name Line Branch
src.bioemu.openfold.np 44% ****
protein.py 31.2%
residue_constants.py 60.7%
src.bioemu.openfold.utils - 50.1%
Name Line Branch
src.bioemu.openfold.utils 50.1% ****
rigid_utils.py 50.1%

@github-actions GitHub Actions
Copy link

Summary

Summary
Generated on: 02/20/2025 - 11:11:13
Parser: Cobertura
Assemblies: 3
Classes: 19
Files: 19
Line coverage: 68.6% (1574 of 2294)
Covered lines: 1574
Uncovered lines: 720
Coverable lines: 2294
Total lines: 7638
Covered branches: 0
Total branches: 0
Method coverage: Feature is only available for sponsors

Coverage

src.bioemu - 84.6%
Name Line Branch
src.bioemu 84.6% ****
init.py
chemgraph.py 100%
convert_chemgraph.py 85%
denoiser.py 96.8%
get_embeds.py 96%
md_utils.py 98.3%
models.py 94.1%
run_hpacker.py 0%
sample.py 49.4%
sde_lib.py 84.3%
seq_io.py 100%
shortcuts.py 100%
sidechain_relax.py 87.2%
so3_sde.py 81%
structure_module.py 99%
utils.py 100%
src.bioemu.openfold.np - 44%
Name Line Branch
src.bioemu.openfold.np 44% ****
protein.py 31.2%
residue_constants.py 60.7%
src.bioemu.openfold.utils - 50.1%
Name Line Branch
src.bioemu.openfold.utils 50.1% ****
rigid_utils.py 50.1%

@thempel thempel enabled auto-merge (squash) February 20, 2025 16:19
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@sarahnlewis sarahnlewis sarahnlewis approved these changes

Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
2 participants
@thempel @sarahnlewis