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Remove defunct macos-12 from CI tests #101

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Remove defunct macos-12 from CI tests

Remove defunct macos-12 from CI tests #101

Triggered via push December 10, 2024 01:14
@lczechlczech
pushed cb77735
master
Status Cancelled
Total duration 3m 37s
Artifacts 51

ci.yaml

on: push
Matrix: envs
Matrix: example
Matrix: test
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145 errors and 1 warning
envs (macos-14, micromamba)
Process completed with exit code 1.
envs (macos-14, mamba)
Process completed with exit code 1.
test (macos-14, base)
The run was canceled by @lczech.
example (macos-14)
The run was canceled by @lczech.
example (macos-14)
The operation was canceled.
example (macos-14)
ENOENT: no such file or directory, lstat '/Users/runner/work/_temp/setup-micromamba/micromamba-shell'
test (macos-13, base)
The run was canceled by @lczech.
test (macos-13, base)
ENOENT: no such file or directory, lstat '/Users/runner/work/_temp/setup-micromamba/micromamba-shell'
test (macos-13, base)
The operation was canceled.
test (macos-13, base)
Process completed with exit code 1.
envs (ubuntu-20.04, micromamba)
The run was canceled by @lczech.
envs (ubuntu-20.04, micromamba)
ENOTEMPTY: directory not empty, rmdir '/home/runner/micromamba/envs/multiqc/conda-meta'
envs (ubuntu-20.04, micromamba)
The operation was canceled.
test (ubuntu-latest, trimming-skewer-2, mamba)
The run was canceled by @lczech.
test (ubuntu-latest, trimming-skewer-2, mamba)
ENOTEMPTY: directory not empty, rmdir '/home/runner/micromamba/envs/grenepipe/pkgs/gatk4-4.5.0.0-py36hdfd78af_0/share'
test (ubuntu-latest, trimming-skewer-2, mamba)
The operation was canceled.
test (ubuntu-latest, calling-haplotypecaller-4, mamba)
The run was canceled by @lczech.
test (ubuntu-latest, calling-haplotypecaller-4, mamba)
ENOTEMPTY: directory not empty, rmdir '/home/runner/micromamba/envs/grenepipe/pkgs/python-3.11.9-hb806964_0_cpython/bin'
test (ubuntu-latest, calling-haplotypecaller-4, mamba)
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test (ubuntu-latest, trimming-adapterremoval-2, mamba)
The run was canceled by @lczech.
test (ubuntu-latest, trimming-adapterremoval-2, mamba)
The operation was canceled.
test (ubuntu-latest, trimming-adapterremoval-2, mamba)
ENOTEMPTY: directory not empty, rmdir '/home/runner/micromamba/envs/grenepipe/pkgs/plotly-5.24.1-pyhd8ed1ab_1/site-packages/_plotly_future_'
envs (ubuntu-24.04, micromamba)
The run was canceled by @lczech.
envs (ubuntu-24.04, micromamba)
ENOTEMPTY: directory not empty, rmdir '/home/runner/micromamba/pkgs/mathjax-2.7.7-ha770c72_3/info/recipe'
envs (ubuntu-24.04, micromamba)
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test (ubuntu-latest, calling-haplotypecaller-2, mamba)
The run was canceled by @lczech.
test (ubuntu-latest, calling-haplotypecaller-2, mamba)
ENOTEMPTY: directory not empty, rmdir '/home/runner/micromamba/envs/grenepipe/pkgs'
test (ubuntu-latest, calling-haplotypecaller-2, mamba)
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test (ubuntu-latest, hafpipe-1, mamba)
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test (ubuntu-latest, hafpipe-1, mamba)
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test (ubuntu-latest, trimming-adapterremoval-3, mamba)
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test (ubuntu-latest, trimming-adapterremoval-3, mamba)
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test (ubuntu-22.04, base)
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test (ubuntu-22.04, base)
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test (ubuntu-latest, trimming-fastp-1, mamba)
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test (ubuntu-22.04, base)
ENOTEMPTY: directory not empty, rmdir '/home/runner/micromamba/envs/grenepipe/pkgs/mathjax-2.7.7-ha770c72_3/lib/mathjax/extensions/TeX'
test (ubuntu-latest, trimming-fastp-1, mamba)
The operation was canceled.
test (ubuntu-latest, trimming-fastp-1, mamba)
ENOTEMPTY: directory not empty, rmdir '/home/runner/micromamba/envs/grenepipe/pkgs/python-3.11.9-hb806964_0_cpython/include/python3.11/cpython'
test (ubuntu-latest, hafpipe-4, mamba)
The run was canceled by @lczech.
test (ubuntu-latest, hafpipe-4, mamba)
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test (ubuntu-latest, hafpipe-2, mamba)
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test (ubuntu-latest, hafpipe-2, mamba)
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test (ubuntu-latest, trimming-adapterremoval-1, mamba)
The run was canceled by @lczech.
test (ubuntu-latest, trimming-adapterremoval-1, mamba)
The operation was canceled.
test (ubuntu-latest, calling-bcftools-3, mamba)
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test (ubuntu-latest, calling-bcftools-3, mamba)
The operation was canceled.
test (ubuntu-latest, trimming-cutadapt-2, mamba)
The run was canceled by @lczech.
test (ubuntu-latest, trimming-cutadapt-2, mamba)
The operation was canceled.
test (ubuntu-latest, calling-bcftools-1, mamba)
The run was canceled by @lczech.
test (ubuntu-latest, calling-bcftools-1, mamba)
ENOTEMPTY: directory not empty, rmdir '/home/runner/micromamba/envs/grenepipe/pkgs/gatk4-4.5.0.0-py36hdfd78af_0/share/gatk4-4.5.0.0-0'
test (ubuntu-latest, calling-bcftools-1, mamba)
The operation was canceled.
test (ubuntu-latest, mapping-bwa-mem-1, mamba)
The run was canceled by @lczech.
test (ubuntu-latest, mapping-bwa-mem-1, mamba)
The operation was canceled.
test (ubuntu-latest, duplicates-dedup-1, mamba)
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test (ubuntu-latest, duplicates-dedup-1, mamba)
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test (ubuntu-latest, trimming-fastp-3, mamba)
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test (ubuntu-latest, trimming-fastp-3, mamba)
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test (ubuntu-latest, mapping-bowtie2-1, mamba)
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test (ubuntu-latest, mapping-bowtie2-1, mamba)
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example (ubuntu-22.04)
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example (ubuntu-22.04)
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example (ubuntu-22.04)
ENOTEMPTY: directory not empty, rmdir '/home/runner/micromamba/envs/grenepipe/pkgs'
test (ubuntu-latest, mapping-bwa-mem2-2, mamba)
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test (ubuntu-latest, mapping-bwa-mem2-2, mamba)
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test (ubuntu-latest, calling-freebayes-2, mamba)
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test (ubuntu-latest, calling-freebayes-2, mamba)
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test (ubuntu-latest, calling-bcftools-4, mamba)
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test (ubuntu-latest, calling-bcftools-4, mamba)
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test (ubuntu-20.04, base)
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test (ubuntu-20.04, base)
The operation was canceled.
test (ubuntu-20.04, base)
ENOTEMPTY: directory not empty, rmdir '/home/runner/micromamba/envs/grenepipe/pkgs/python-3.13.1-ha99a958_102_cp313/bin'
test (ubuntu-latest, calling-haplotypecaller-3, mamba)
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test (ubuntu-latest, calling-haplotypecaller-3, mamba)
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test (ubuntu-latest, pileup-1, mamba)
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test (ubuntu-latest, pileup-1, mamba)
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test (ubuntu-latest, duplicates-dedup-2, mamba)
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test (ubuntu-latest, duplicates-dedup-2, mamba)
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test (ubuntu-latest, trimming-skewer-1, mamba)
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test (ubuntu-latest, trimming-none, mamba)
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test (ubuntu-latest, trimming-skewer-1, mamba)
The operation was canceled.
test (ubuntu-latest, trimming-skewer-1, mamba)
ENOTEMPTY: directory not empty, rmdir '/home/runner/micromamba/envs/grenepipe/pkgs/_libgcc_mutex-0.1-conda_forge'
test (ubuntu-latest, trimming-none, mamba)
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test (ubuntu-latest, calling-freebayes-3, mamba)
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test (ubuntu-latest, calling-freebayes-3, mamba)
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test (ubuntu-latest, calling-freebayes-3, mamba)
ENOTEMPTY: directory not empty, rmdir '/home/runner/micromamba/envs/grenepipe/pkgs/bioconductor-biobase-2.62.0-r43ha9d7317_3/info'
test (ubuntu-latest, trimming-seqprep-2, mamba)
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test (ubuntu-latest, trimming-seqprep-2, mamba)
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test (ubuntu-latest, mapping-bwa-mem2-1, mamba)
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test (ubuntu-latest, mapping-bwa-mem2-1, mamba)
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test (ubuntu-latest, base, mamba)
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test (ubuntu-latest, base, mamba)
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test (ubuntu-latest, base, mamba)
ENOTEMPTY: directory not empty, rmdir '/home/runner/micromamba/envs/grenepipe/pkgs'
test (ubuntu-latest, calling-bcftools-2, mamba)
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test (ubuntu-latest, calling-bcftools-2, mamba)
ENOTEMPTY: directory not empty, rmdir '/home/runner/micromamba/envs/grenepipe/pkgs'
test (ubuntu-latest, calling-bcftools-2, mamba)
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example (ubuntu-24.04)
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example (ubuntu-24.04)
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test (ubuntu-latest, calling-haplotypecaller-1, mamba)
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test (ubuntu-latest, calling-haplotypecaller-1, mamba)
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test (ubuntu-latest, calling-freebayes-1, mamba)
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test (ubuntu-latest, calling-freebayes-1, mamba)
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test (ubuntu-latest, mapping-bwa-aln-2, mamba)
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test (ubuntu-latest, mapping-bwa-aln-2, mamba)
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test (ubuntu-latest, trimming-fastp-2, mamba)
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test (ubuntu-latest, trimming-fastp-2, mamba)
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test (ubuntu-latest, trimming-seqprep-1, mamba)
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test (ubuntu-latest, trimming-seqprep-1, mamba)
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envs (ubuntu-20.04, mamba)
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envs (ubuntu-20.04, mamba)
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envs (ubuntu-20.04, mamba)
ENOTEMPTY: directory not empty, rmdir '/home/runner/micromamba/envs/grenepipe/pkgs'
envs (ubuntu-24.04, mamba)
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envs (ubuntu-24.04, mamba)
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envs (ubuntu-22.04, mamba)
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envs (ubuntu-22.04, mamba)
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test (ubuntu-latest, trimming-cutadapt-1, mamba)
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test (ubuntu-latest, trimming-cutadapt-1, mamba)
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example (ubuntu-20.04)
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example (ubuntu-20.04)
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test (ubuntu-latest, mapping-bowtie2-2, mamba)
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test (ubuntu-latest, mapping-bowtie2-2, mamba)
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test (ubuntu-latest, download, mamba)
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test (ubuntu-latest, download, mamba)
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test (ubuntu-latest, mapping-bwa-aln-3, mamba)
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test (ubuntu-latest, mapping-bwa-aln-3, mamba)
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test (ubuntu-latest, mapping-bwa-aln-3, mamba)
ENOTEMPTY: directory not empty, rmdir '/home/runner/micromamba/envs/grenepipe/pkgs/mathjax-2.7.7-ha770c72_3/lib/mathjax/config'
test (ubuntu-latest, mapping-bwa-aln-1, mamba)
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test (ubuntu-latest, mapping-bwa-aln-1, mamba)
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test (ubuntu-latest, mapping-bwa-aln-4, mamba)
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test (ubuntu-latest, mapping-bwa-aln-4, mamba)
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test (ubuntu-latest, mappings-table, mamba)
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test (ubuntu-latest, mappings-table, mamba)
ENOTEMPTY: directory not empty, rmdir '/home/runner/micromamba/envs/grenepipe/pkgs/mathjax-2.7.7-ha770c72_3/lib/mathjax/fonts/HTML-CSS/TeX/png/AMS/Regular/unpacked'
test (ubuntu-latest, mappings-table, mamba)
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test (ubuntu-24.04, base)
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test (ubuntu-24.04, base)
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envs (ubuntu-22.04, micromamba)
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envs (ubuntu-22.04, micromamba)
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envs (ubuntu-22.04, micromamba)
ENOTEMPTY: directory not empty, rmdir '/home/runner/micromamba/envs/multiqc/lib/mathjax'
test (ubuntu-latest, hafpipe-3, mamba)
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test (ubuntu-latest, hafpipe-3, mamba)
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example (macos-13)
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example (macos-13)
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envs (macos-13, mamba)
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envs (macos-13, mamba)
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envs (macos-13, micromamba)
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envs (macos-13, micromamba)
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example (macos-14)
No files were found with the provided path: example/run.log example/logs/ example/.snakemake/log/. No artifacts will be uploaded.

Artifacts

Produced during runtime
Name Size
logs-example-macos-13
2.93 KB
logs-example-ubuntu-20.04
3.53 KB
logs-example-ubuntu-22.04
3.63 KB
logs-example-ubuntu-24.04
3.62 KB
logs-test-macos-13-base
283 Bytes
logs-test-ubuntu-20.04-base
21.7 KB
logs-test-ubuntu-22.04-base
21.8 KB
logs-test-ubuntu-24.04-base
22.1 KB
logs-test-ubuntu-latest-base
22.1 KB
logs-test-ubuntu-latest-calling-bcftools-1
22.2 KB
logs-test-ubuntu-latest-calling-bcftools-2
21.9 KB
logs-test-ubuntu-latest-calling-bcftools-3
22.4 KB
logs-test-ubuntu-latest-calling-bcftools-4
21.9 KB
logs-test-ubuntu-latest-calling-freebayes-1
22.2 KB
logs-test-ubuntu-latest-calling-freebayes-2
22.2 KB
logs-test-ubuntu-latest-calling-freebayes-3
22.1 KB
logs-test-ubuntu-latest-calling-haplotypecaller-1
22.1 KB
logs-test-ubuntu-latest-calling-haplotypecaller-2
22 KB
logs-test-ubuntu-latest-calling-haplotypecaller-3
21.9 KB
logs-test-ubuntu-latest-calling-haplotypecaller-4
22.4 KB
logs-test-ubuntu-latest-download
22.2 KB
logs-test-ubuntu-latest-duplicates-dedup-1
22.4 KB
logs-test-ubuntu-latest-duplicates-dedup-2
22.1 KB
logs-test-ubuntu-latest-hafpipe-1
35.1 KB
logs-test-ubuntu-latest-hafpipe-2
42 KB
logs-test-ubuntu-latest-hafpipe-3
37.9 KB
logs-test-ubuntu-latest-hafpipe-4
40.2 KB
logs-test-ubuntu-latest-mapping-bowtie2-1
22.3 KB
logs-test-ubuntu-latest-mapping-bowtie2-2
22.2 KB
logs-test-ubuntu-latest-mapping-bwa-aln-1
22.3 KB
logs-test-ubuntu-latest-mapping-bwa-aln-2
22 KB
logs-test-ubuntu-latest-mapping-bwa-aln-3
22.3 KB
logs-test-ubuntu-latest-mapping-bwa-aln-4
22 KB
logs-test-ubuntu-latest-mapping-bwa-mem-1
22.2 KB
logs-test-ubuntu-latest-mapping-bwa-mem2-1
22.3 KB
logs-test-ubuntu-latest-mapping-bwa-mem2-2
22.5 KB
logs-test-ubuntu-latest-mappings-table
22 KB
logs-test-ubuntu-latest-pileup-1
21.6 KB
logs-test-ubuntu-latest-trimming-adapterremoval-1
22.5 KB
logs-test-ubuntu-latest-trimming-adapterremoval-2
22.1 KB
logs-test-ubuntu-latest-trimming-adapterremoval-3
22.7 KB
logs-test-ubuntu-latest-trimming-cutadapt-1
22.3 KB
logs-test-ubuntu-latest-trimming-cutadapt-2
22.1 KB
logs-test-ubuntu-latest-trimming-fastp-1
22.5 KB
logs-test-ubuntu-latest-trimming-fastp-2
22.3 KB
logs-test-ubuntu-latest-trimming-fastp-3
22.3 KB
logs-test-ubuntu-latest-trimming-none
22 KB
logs-test-ubuntu-latest-trimming-seqprep-1
21.9 KB
logs-test-ubuntu-latest-trimming-seqprep-2
22.3 KB
logs-test-ubuntu-latest-trimming-skewer-1
22.2 KB
logs-test-ubuntu-latest-trimming-skewer-2
21.9 KB