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Split java opts from mem resources in config #111

Split java opts from mem resources in config

Split java opts from mem resources in config #111

Triggered via push February 11, 2025 15:52
Status Failure
Total duration 38m 2s
Artifacts 51

ci.yaml

on: push
Matrix: envs
Matrix: example
Matrix: test
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36 errors and 1 warning
test (ubuntu-latest, calling-bcftools-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-bcftools-4, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-haplotypecaller-4, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mappings-table, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-haplotypecaller-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-adapterremoval-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-none, mamba)
Process completed with exit code 1.
test (ubuntu-latest, duplicates-dedup-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, duplicates-dedup-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-haplotypecaller-3, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-haplotypecaller-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-seqprep-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-seqprep-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-skewer-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-adapterremoval-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-cutadapt-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-skewer-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwa-aln-4, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-fastp-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwa-aln-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwa-aln-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwa-aln-3, mamba)
Process completed with exit code 1.
test (ubuntu-24.04, base)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwa-mem2-1, mamba)
Process completed with exit code 1.
test (ubuntu-20.04, base)
Process completed with exit code 1.
test (ubuntu-latest, base, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bowtie2-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwa-mem2-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwa-mem-1, mamba)
Process completed with exit code 1.
test (ubuntu-22.04, base)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bowtie2-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-cutadapt-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-fastp-3, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-fastp-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-adapterremoval-3, mamba)
Process completed with exit code 1.
test (macos-13, base)
Process completed with exit code 1.
test (ubuntu-20.04, base)
The Ubuntu-20.04 brownout takes place from 2025-02-01. For more details, see https://github.com/actions/runner-images/issues/11101

Artifacts

Produced during runtime
Name Size
logs-example-macos-13
321 KB
logs-example-ubuntu-20.04
320 KB
logs-example-ubuntu-22.04
320 KB
logs-example-ubuntu-24.04
319 KB
logs-test-macos-13-base
356 KB
logs-test-ubuntu-20.04-base
356 KB
logs-test-ubuntu-22.04-base
354 KB
logs-test-ubuntu-24.04-base
355 KB
logs-test-ubuntu-latest-base
355 KB
logs-test-ubuntu-latest-calling-bcftools-1
90.9 KB
logs-test-ubuntu-latest-calling-bcftools-2
20.2 KB
logs-test-ubuntu-latest-calling-bcftools-3
105 KB
logs-test-ubuntu-latest-calling-bcftools-4
20.2 KB
logs-test-ubuntu-latest-calling-freebayes-1
101 KB
logs-test-ubuntu-latest-calling-freebayes-2
93 KB
logs-test-ubuntu-latest-calling-freebayes-3
101 KB
logs-test-ubuntu-latest-calling-haplotypecaller-1
353 KB
logs-test-ubuntu-latest-calling-haplotypecaller-2
236 KB
logs-test-ubuntu-latest-calling-haplotypecaller-3
354 KB
logs-test-ubuntu-latest-calling-haplotypecaller-4
20.3 KB
logs-test-ubuntu-latest-download
102 KB
logs-test-ubuntu-latest-duplicates-dedup-1
345 KB
logs-test-ubuntu-latest-duplicates-dedup-2
344 KB
logs-test-ubuntu-latest-hafpipe-1
105 KB
logs-test-ubuntu-latest-hafpipe-2
112 KB
logs-test-ubuntu-latest-hafpipe-3
113 KB
logs-test-ubuntu-latest-hafpipe-4
110 KB
logs-test-ubuntu-latest-mapping-bowtie2-1
354 KB
logs-test-ubuntu-latest-mapping-bowtie2-2
363 KB
logs-test-ubuntu-latest-mapping-bwa-aln-1
363 KB
logs-test-ubuntu-latest-mapping-bwa-aln-2
360 KB
logs-test-ubuntu-latest-mapping-bwa-aln-3
371 KB
logs-test-ubuntu-latest-mapping-bwa-aln-4
365 KB
logs-test-ubuntu-latest-mapping-bwa-mem-1
362 KB
logs-test-ubuntu-latest-mapping-bwa-mem2-1
361 KB
logs-test-ubuntu-latest-mapping-bwa-mem2-2
367 KB
logs-test-ubuntu-latest-mappings-table
324 KB
logs-test-ubuntu-latest-pileup-1
63.8 KB
logs-test-ubuntu-latest-trimming-adapterremoval-1
346 KB
logs-test-ubuntu-latest-trimming-adapterremoval-2
355 KB
logs-test-ubuntu-latest-trimming-adapterremoval-3
356 KB
logs-test-ubuntu-latest-trimming-cutadapt-1
352 KB
logs-test-ubuntu-latest-trimming-cutadapt-2
408 KB
logs-test-ubuntu-latest-trimming-fastp-1
364 KB
logs-test-ubuntu-latest-trimming-fastp-2
353 KB
logs-test-ubuntu-latest-trimming-fastp-3
356 KB
logs-test-ubuntu-latest-trimming-none
343 KB
logs-test-ubuntu-latest-trimming-seqprep-1
249 KB
logs-test-ubuntu-latest-trimming-seqprep-2
249 KB
logs-test-ubuntu-latest-trimming-skewer-1
373 KB
logs-test-ubuntu-latest-trimming-skewer-2
372 KB