Fix gatk and bcftools rule setup #112
lczechAnnotations
4 errors and 1 warning
|
test (ubuntu-latest, calling-haplotypecaller-4, mamba)
Process completed with exit code 1.
|
|
test (ubuntu-latest, trimming-cutadapt-2, mamba)
Process completed with exit code 1.
|
|
test (ubuntu-latest, trimming-fastp-1, mamba)
Process completed with exit code 1.
|
|
test (macos-13, base)
Process completed with exit code 1.
|
|
envs (ubuntu-20.04, micromamba)
The Ubuntu-20.04 brownout takes place from 2025-02-01. For more details, see https://github.com/actions/runner-images/issues/11101
|
Artifacts
Produced during runtime
| Name | Size | |
|---|---|---|
|
logs-example-macos-13
|
145 KB |
|
|
logs-example-ubuntu-20.04
|
142 KB |
|
|
logs-example-ubuntu-22.04
|
140 KB |
|
|
logs-example-ubuntu-24.04
|
140 KB |
|
|
logs-test-macos-13-base
|
185 KB |
|
|
logs-test-ubuntu-20.04-base
|
184 KB |
|
|
logs-test-ubuntu-22.04-base
|
184 KB |
|
|
logs-test-ubuntu-24.04-base
|
186 KB |
|
|
logs-test-ubuntu-latest-base
|
185 KB |
|
|
logs-test-ubuntu-latest-calling-bcftools-1
|
91.5 KB |
|
|
logs-test-ubuntu-latest-calling-bcftools-2
|
92.5 KB |
|
|
logs-test-ubuntu-latest-calling-bcftools-3
|
105 KB |
|
|
logs-test-ubuntu-latest-calling-bcftools-4
|
101 KB |
|
|
logs-test-ubuntu-latest-calling-freebayes-1
|
101 KB |
|
|
logs-test-ubuntu-latest-calling-freebayes-2
|
93.7 KB |
|
|
logs-test-ubuntu-latest-calling-freebayes-3
|
102 KB |
|
|
logs-test-ubuntu-latest-calling-haplotypecaller-1
|
184 KB |
|
|
logs-test-ubuntu-latest-calling-haplotypecaller-2
|
149 KB |
|
|
logs-test-ubuntu-latest-calling-haplotypecaller-3
|
183 KB |
|
|
logs-test-ubuntu-latest-calling-haplotypecaller-4
|
165 KB |
|
|
logs-test-ubuntu-latest-download
|
103 KB |
|
|
logs-test-ubuntu-latest-duplicates-dedup-1
|
170 KB |
|
|
logs-test-ubuntu-latest-duplicates-dedup-2
|
171 KB |
|
|
logs-test-ubuntu-latest-hafpipe-1
|
106 KB |
|
|
logs-test-ubuntu-latest-hafpipe-2
|
112 KB |
|
|
logs-test-ubuntu-latest-hafpipe-3
|
113 KB |
|
|
logs-test-ubuntu-latest-hafpipe-4
|
110 KB |
|
|
logs-test-ubuntu-latest-mapping-bowtie2-1
|
176 KB |
|
|
logs-test-ubuntu-latest-mapping-bowtie2-2
|
187 KB |
|
|
logs-test-ubuntu-latest-mapping-bwa-aln-1
|
186 KB |
|
|
logs-test-ubuntu-latest-mapping-bwa-aln-2
|
178 KB |
|
|
logs-test-ubuntu-latest-mapping-bwa-aln-3
|
195 KB |
|
|
logs-test-ubuntu-latest-mapping-bwa-aln-4
|
185 KB |
|
|
logs-test-ubuntu-latest-mapping-bwa-mem-1
|
176 KB |
|
|
logs-test-ubuntu-latest-mapping-bwa-mem2-1
|
174 KB |
|
|
logs-test-ubuntu-latest-mapping-bwa-mem2-2
|
200 KB |
|
|
logs-test-ubuntu-latest-mappings-table
|
150 KB |
|
|
logs-test-ubuntu-latest-pileup-1
|
63.8 KB |
|
|
logs-test-ubuntu-latest-trimming-adapterremoval-1
|
163 KB |
|
|
logs-test-ubuntu-latest-trimming-adapterremoval-2
|
182 KB |
|
|
logs-test-ubuntu-latest-trimming-adapterremoval-3
|
175 KB |
|
|
logs-test-ubuntu-latest-trimming-cutadapt-1
|
180 KB |
|
|
logs-test-ubuntu-latest-trimming-cutadapt-2
|
230 KB |
|
|
logs-test-ubuntu-latest-trimming-fastp-1
|
187 KB |
|
|
logs-test-ubuntu-latest-trimming-fastp-2
|
171 KB |
|
|
logs-test-ubuntu-latest-trimming-fastp-3
|
173 KB |
|
|
logs-test-ubuntu-latest-trimming-none
|
168 KB |
|
|
logs-test-ubuntu-latest-trimming-seqprep-1
|
145 KB |
|
|
logs-test-ubuntu-latest-trimming-seqprep-2
|
140 KB |
|
|
logs-test-ubuntu-latest-trimming-skewer-1
|
199 KB |
|
|
logs-test-ubuntu-latest-trimming-skewer-2
|
200 KB |
|