Fix picard java opts #113
lczechAnnotations
1 error and 2 warnings
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test (ubuntu-latest, calling-haplotypecaller-4, mamba)
Process completed with exit code 1.
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envs (ubuntu-20.04, micromamba)
The Ubuntu-20.04 brownout takes place from 2025-02-01. For more details, see https://github.com/actions/runner-images/issues/11101
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example (ubuntu-20.04)
The Ubuntu-20.04 brownout takes place from 2025-02-01. For more details, see https://github.com/actions/runner-images/issues/11101
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Artifacts
Produced during runtime
| Name | Size | |
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logs-example-macos-13
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144 KB |
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logs-example-ubuntu-20.04
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142 KB |
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logs-example-ubuntu-22.04
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142 KB |
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logs-example-ubuntu-24.04
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140 KB |
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logs-test-macos-13-base
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187 KB |
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logs-test-ubuntu-20.04-base
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186 KB |
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logs-test-ubuntu-22.04-base
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186 KB |
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logs-test-ubuntu-24.04-base
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187 KB |
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logs-test-ubuntu-latest-base
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185 KB |
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logs-test-ubuntu-latest-calling-bcftools-1
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91.6 KB |
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logs-test-ubuntu-latest-calling-bcftools-2
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93.1 KB |
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logs-test-ubuntu-latest-calling-bcftools-3
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106 KB |
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logs-test-ubuntu-latest-calling-bcftools-4
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104 KB |
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logs-test-ubuntu-latest-calling-freebayes-1
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101 KB |
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logs-test-ubuntu-latest-calling-freebayes-2
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93.7 KB |
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logs-test-ubuntu-latest-calling-freebayes-3
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102 KB |
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logs-test-ubuntu-latest-calling-haplotypecaller-1
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184 KB |
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logs-test-ubuntu-latest-calling-haplotypecaller-2
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150 KB |
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logs-test-ubuntu-latest-calling-haplotypecaller-3
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183 KB |
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logs-test-ubuntu-latest-calling-haplotypecaller-4
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167 KB |
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logs-test-ubuntu-latest-download
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103 KB |
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logs-test-ubuntu-latest-duplicates-dedup-1
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171 KB |
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logs-test-ubuntu-latest-duplicates-dedup-2
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171 KB |
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logs-test-ubuntu-latest-hafpipe-1
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107 KB |
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logs-test-ubuntu-latest-hafpipe-2
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112 KB |
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logs-test-ubuntu-latest-hafpipe-3
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113 KB |
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logs-test-ubuntu-latest-hafpipe-4
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110 KB |
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logs-test-ubuntu-latest-mapping-bowtie2-1
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178 KB |
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logs-test-ubuntu-latest-mapping-bowtie2-2
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187 KB |
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logs-test-ubuntu-latest-mapping-bwa-aln-1
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186 KB |
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logs-test-ubuntu-latest-mapping-bwa-aln-2
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178 KB |
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logs-test-ubuntu-latest-mapping-bwa-aln-3
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196 KB |
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logs-test-ubuntu-latest-mapping-bwa-aln-4
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185 KB |
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logs-test-ubuntu-latest-mapping-bwa-mem-1
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177 KB |
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logs-test-ubuntu-latest-mapping-bwa-mem2-1
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175 KB |
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logs-test-ubuntu-latest-mapping-bwa-mem2-2
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201 KB |
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logs-test-ubuntu-latest-mappings-table
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151 KB |
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logs-test-ubuntu-latest-pileup-1
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64.4 KB |
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logs-test-ubuntu-latest-trimming-adapterremoval-1
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163 KB |
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logs-test-ubuntu-latest-trimming-adapterremoval-2
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182 KB |
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logs-test-ubuntu-latest-trimming-adapterremoval-3
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175 KB |
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logs-test-ubuntu-latest-trimming-cutadapt-1
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180 KB |
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logs-test-ubuntu-latest-trimming-cutadapt-2
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278 KB |
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logs-test-ubuntu-latest-trimming-fastp-1
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234 KB |
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logs-test-ubuntu-latest-trimming-fastp-2
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171 KB |
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logs-test-ubuntu-latest-trimming-fastp-3
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174 KB |
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logs-test-ubuntu-latest-trimming-none
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168 KB |
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logs-test-ubuntu-latest-trimming-seqprep-1
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145 KB |
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logs-test-ubuntu-latest-trimming-seqprep-2
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139 KB |
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logs-test-ubuntu-latest-trimming-skewer-1
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200 KB |
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logs-test-ubuntu-latest-trimming-skewer-2
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201 KB |
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