Implement bond interactions#272

Merged

mphoward merged 55 commits intomainfrom

feature/bonded-interactions

Jan 7, 2025

Commits on Sep 3, 2024

Add bond potential module. Add Harmonic and FENE.
clpetix
committed
Merge branch 'main' of https://github.com/mphowardlab/relentless into feature/bonded-interactions
clpetix
committed

Commits on Oct 2, 2024

Merge branch 'main' of https://github.com/mphowardlab/relentless into feature/bonded-interactions
clpetix
committed

Commits on Oct 7, 2024

Commits on Oct 9, 2024

Remove _potentials_rmax as it is vestigial
clpetix
committed

Commits on Oct 10, 2024

Commits on Oct 11, 2024

Rough implementation of LAMMPS when coming from HOOMD GSD.
clpetix
committed

Commits on Oct 15, 2024

Commits on Oct 16, 2024

Process exclusions to neighborlist in LAMMPS.
clpetix
committed

Commits on Oct 17, 2024

add option to specify atom_style.
clpetix
committed

Commits on Nov 6, 2024

Add cantor pairing as private method to reduce duplication.
clpetix
committed

Commits on Nov 12, 2024

Add bond unit tests.
clpetix
committed

Commits on Nov 14, 2024

Add BondedPotential class, fix derivative method, update tests.
clpetix
committed

Commits on Nov 20, 2024

Commits on Nov 21, 2024

Commits on Nov 22, 2024

Commits on Dec 10, 2024

Bump lammpsio version.
clpetix
committed

Commits on Dec 11, 2024

Commits on Jan 7, 2025

Merge branch 'main' into feature/bonded-interactions
mphoward
authored