WIP: Use HoloViews

nanshe_ipython.ipynb

@@ -322,6 +322,45 @@
         ")"
       ]
     },
+    {
+      "cell_type": "code",
+      "execution_count": null,
+      "metadata": {},
+      "outputs": [],
+      "source": [
+        "import dask.array as da\n",
+        "import holoviews as hv\n",
+        "import numpy as np\n",
+        "\n",
+        "\n",
+        "hv.extension(\"matplotlib\")\n",
+        "\n",
+        "darr = dask_store[subgroup_raw]\n",
+        "\n",
+        "# Tuple constructor\n",
+        "coords = tuple(range(s) for s in darr.shape)\n",
+        "hd = hv.Dataset(coords[::-1] + (darr,), ['t', 'y', 'x'][::-1], 'z')\n",
+        "\n",
+        "image_stack = hd.to(hv.Image, ['x', 'y'], dynamic=True)\n",
+        "\n",
+        "display_obj = image_stack.opts(\n",
+        "    plot={\n",
+        "        \"Image\": dict(\n",
+        "            colorbar=True,\n",
+        "            invert_yaxis=True,\n",
+        "            aspect=\"equal\",\n",
+        "        )\n",
+        "    },\n",
+        "    style={\n",
+        "        \"Image\": dict(\n",
+        "            cmap=\"gray\",\n",
+        "        )\n",
+        "    }\n",
+        ")\n",
+        "\n",
+        "display_obj"
+      ]
+    },
     {
       "cell_type": "markdown",
       "metadata": {},

nanshe_workflow.recipe/meta.yaml

@@ -22,6 +22,7 @@ requirements:
     - psutil
     - nanshe >=0.1.0a54
     - bokeh >=0.12.4
+    - holoviews >=1.10.0a1
     - future
     - webcolors
     - nbconvert