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[2.2.2] - Ulm (Patch) - 2020-12-09
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@jfy133 jfy133 released this 09 Dec 07:50
· 864 commits to master since this release
2.2.2
85e2e32
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Learn about vigilant mode.

Added

  • Added large scale 'stress-test' profile for AWS (using de Barros Damgaard et al. 2018's 137 ancient human genomes).
    • This will now be run automatically for every release. All processed data will be available on the nf-core website: https://nf-co.re/eager/results
      • You can run this yourself using -profile test_full

Fixed

  • Fixed AWS full test profile.
  • #587 - Re-implemented AdapterRemovalFixPrefix for DeDup compatibility of including singletons
  • #602 - Added the newly available GATK 3.5 conda package.
  • #610 - Create bwa_index channel when specifying circularmapper as mapper
  • Updated template to nf-core/tools 1.12.1
  • General documentation improvements

Deprecated

  • Flag --gatk_ug_jar has now been removed as GATK 3.5 is now avaliable within the nf-core/eager software environment.
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