Renamed folder from Trimmomatic to trimmomatic

nf-core · Jan 17, 2025 · 57f463f · 57f463f
1 parent ca907e0
commit 57f463f
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Showing 14 changed files with 3 additions and 3 deletions.
diff --git a/.github/ISSUE_TEMPLATE/bug_report.yml b/.github/ISSUE_TEMPLATE/bug_report.yml
@@ -9,7 +9,6 @@ body:
 
         - [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
         - [nf-core/mag pipeline documentation](https://nf-co.re/mag/usage)
-
   - type: textarea
     id: description
     attributes:

diff --git a/.prettierignore b/.prettierignore
@@ -10,3 +10,4 @@ testing/
 testing*
 *.pyc
 bin/
+ro-crate-metadata.json
diff --git a/LICENSE b/LICENSE
@@ -1,6 +1,6 @@
 MIT License
 
-Copyright (c) Hadrien Gourlé, Daniel Straub, Sabrina Krakau, James A. Fellows Yates, Maxime Borry
+Copyright (c) The nf-core/mag team
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

diff --git a/assets/nf-core-mag_logo_light.png b/assets/nf-core-mag_logo_light.png
diff --git a/docs/images/nf-core-mag_logo_light.png b/docs/images/nf-core-mag_logo_light.png
diff --git a/modules/nf-core/Trimmomatic/environment.yml → modules/nf-core/trimmomatic/environment.yml b/modules/nf-core/Trimmomatic/environment.yml → modules/nf-core/trimmomatic/environment.yml
diff --git a/modules/nf-core/Trimmomatic/main.nf → modules/nf-core/trimmomatic/main.nf b/modules/nf-core/Trimmomatic/main.nf → modules/nf-core/trimmomatic/main.nf
diff --git a/modules/nf-core/Trimmomatic/meta.yml → modules/nf-core/trimmomatic/meta.yml b/modules/nf-core/Trimmomatic/meta.yml → modules/nf-core/trimmomatic/meta.yml
diff --git a/...es/nf-core/Trimmomatic/tests/main.nf.test → ...es/nf-core/trimmomatic/tests/main.nf.test b/...es/nf-core/Trimmomatic/tests/main.nf.test → ...es/nf-core/trimmomatic/tests/main.nf.test
diff --git a/...-core/Trimmomatic/tests/main.nf.test.snap → ...-core/trimmomatic/tests/main.nf.test.snap b/...-core/Trimmomatic/tests/main.nf.test.snap → ...-core/trimmomatic/tests/main.nf.test.snap
diff --git a/...core/Trimmomatic/tests/nextflow_PE.config → ...core/trimmomatic/tests/nextflow_PE.config b/...core/Trimmomatic/tests/nextflow_PE.config → ...core/trimmomatic/tests/nextflow_PE.config
diff --git a/...core/Trimmomatic/tests/nextflow_SE.config → ...core/trimmomatic/tests/nextflow_SE.config b/...core/Trimmomatic/tests/nextflow_SE.config → ...core/trimmomatic/tests/nextflow_SE.config
diff --git a/modules/nf-core/Trimmomatic/tests/tags.yml → modules/nf-core/trimmomatic/tests/tags.yml b/modules/nf-core/Trimmomatic/tests/tags.yml → modules/nf-core/trimmomatic/tests/tags.yml
diff --git a/subworkflows/local/shortread_preprocessing.nf b/subworkflows/local/shortread_preprocessing.nf
@@ -5,7 +5,7 @@
 include { FASTQC as FASTQC_RAW                                } from '../../modules/nf-core/fastqc/main'
 include { FASTQC as FASTQC_TRIMMED                            } from '../../modules/nf-core/fastqc/main'
 include { FASTP                                               } from '../../modules/nf-core/fastp/main'
-include { TRIMMOMATIC                                         } from '../../modules/nf-core/Trimmomatic/main'
+include { TRIMMOMATIC                                         } from '../../modules/nf-core/trimmomatic/main'
 include { ADAPTERREMOVAL as ADAPTERREMOVAL_PE                 } from '../../modules/nf-core/adapterremoval/main'
 include { ADAPTERREMOVAL as ADAPTERREMOVAL_SE                 } from '../../modules/nf-core/adapterremoval/main'
 include { BOWTIE2_REMOVAL_BUILD as BOWTIE2_HOST_REMOVAL_BUILD } from '../../modules/local/bowtie2_removal_build'
-Original file line number
+Diff line change
@@ Expand Up / @@ -10,3 +10,4 @@ testing/ @@
     testing*
     *.pyc
     bin/
+    ro-crate-metadata.json