Only post-bin binned contigs

nf-core · Jan 15, 2025 · fef6562 · fef6562
1 parent ffbd083
commit fef6562
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/conf/test_full.config b/conf/test_full.config
@@ -42,6 +42,9 @@ params {
     // Skip CONCOCT due to timeout issues
     skip_concoct               = true
 
+    // Don't include unbinned contigs for downstream due to huge number, resulting in very long (and expensive) GTDB run times on AWS
+    exclude_unbins_from_postbinning = true
+
     // Set Prokka compliance mode to allow metaSPAdes bins to be annotated
     prokka_with_compliance     = true
     prokka_compliance_centre  = "nfcore"