Added Trimmomatic, support contig for bining, set concoct default parameters#745

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Pranjal-Bioinfo wants to merge 26 commits intonf-core:devfrom Pranjal-Bioinfo:Trimmomatic-contig-concoct

+527-6

Commits on Jan 20, 2025

Update modules.config

Pranjal-Bioinfo
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GallVp
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Update test.config

Pranjal-Bioinfo
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GallVp
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Update modules.json

Pranjal-Bioinfo
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GallVp
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Create Trimmomatic

Pranjal-Bioinfo
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GallVp
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Delete modules/nf-core/Trimmomatic

Pranjal-Bioinfo
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GallVp
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Create environment.yml

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GallVp
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Create main.nf

Pranjal-Bioinfo
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GallVp
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Create meta.yml

Pranjal-Bioinfo
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GallVp
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Create main.nf.test

Pranjal-Bioinfo
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GallVp
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Create main.nf.test.snap

Pranjal-Bioinfo
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GallVp
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Create nextflow_PE.config

Pranjal-Bioinfo
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GallVp
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Create nextflow_SE.config

Pranjal-Bioinfo
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GallVp
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Create tags.yml

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GallVp
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Update nextflow_schema.json

Pranjal-Bioinfo
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GallVp
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Update shortread_preprocessing.nf

Pranjal-Bioinfo
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GallVp
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Update shortread_preprocessing.nf

Pranjal-Bioinfo
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GallVp
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Update shortread_preprocessing.nf

Pranjal-Bioinfo
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GallVp
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Update mag.nf

Pranjal-Bioinfo
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GallVp
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Update modules.config

Pranjal-Bioinfo
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GallVp
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Renamed folder from Trimmomatic to trimmomatic

Pranjal-Bioinfo
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GallVp
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Fixed linting issues
GallVp
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Removed test config change
GallVp
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Added parameter spades_use_contigs_not_scaffolds
GallVp
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Fixed pre-commit
GallVp
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Restored logos from dev
GallVp
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update changelog
sateeshperi
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