new module: INSTANSEG

[migueLib]

Is there an existing module for this?

• I have searched for the existing module

Is there an open PR for this?

• I have searched for existing PRs

Is there an open issue for this?

• I have searched for existing issues

Further Information

I would like to add this as a module.

https://github.com/instanseg/instanseg

Are you going to work on this?

• If I'm planning to work on this module, I added myself to the Assignees to facilitate tracking who is working on the module

[BioinfoTongLI]

Hi @migueLib! Just wondering is there any progress on your side? Please lmk if you need any help on this. Happy to help as well if needed!
Best,
Tong

[migueLib]

Hi @BioinfoTongLI!

@XeniaTamara and I are training an Instantseg model for nuclear segmentation the moment and actively working to get all the pieces together to bring it into nf-core. Thank you for offering your help, we will keep you posted and we'll let you know if anything is needed.

Best,
Miguel

[BioinfoTongLI]

oh great! just out of curiosity, are you training a new model or retrainiing based on your local dataests?

[migueLib]

We are training a new model based on all the publicly available data we can get our hands on. 🚀