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Pull requests: nf-core/modules

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Pull requests list

Adding mem2 mode to bwameth/index
#8838 opened Jul 31, 2025 by mbeavitt Loading…
3 of 4 tasks
2
add estimatemutationalburden as module
#8837 opened Jul 31, 2025 by famosab Loading…
17 tasks
1
Tidy up MitoHiFi modules
#8836 opened Jul 31, 2025 by prototaxites Loading…
2 of 17 tasks
feat: Add trimal module
#8826 opened Jul 29, 2025 by IceGreb Loading…
6 tasks
@IceGreb
Add dragen germline module
#8823 opened Jul 29, 2025 by marrip • Draft
7 of 17 tasks
@marrip
2
Modernize arm profiles
#8821 opened Jul 28, 2025 by edmundmiller Loading…
@edmundmiller
Migrate STARFUSION_DETECT local module new module Adding a new module
#8813 opened Jul 24, 2025 by delfiterradas Loading…
10 of 17 tasks
1
@delfiterradas
3
POC: declare ext variable defaults as directives
#8808 opened Jul 24, 2025 by nvnieuwk • Draft
New module: biomformat/convert module new module Adding a new module
#8801 opened Jul 22, 2025 by jcbioinformatics Loading…
14 tasks done
1
64
add viber module new module Adding a new module
#8797 opened Jul 21, 2025 by giorgiagandolfi Loading…
17 tasks
1
Update mobster module update module
#8791 opened Jul 21, 2025 by elena-buscaroli Loading…
4 of 17 tasks
1
6
BUSCO 6 update help wanted Extra attention is needed update module
#8781 opened Jul 16, 2025 by DLBPointon Loading…
4 of 6 tasks
@DLBPointon
8
Add new subworkflow VCF_FILTER_BCFTOOLS_FILTERVEP
#8777 opened Jul 16, 2025 by fellen31 Loading…
17 tasks
Fix some modules related to the hadge pipeline
#8767 opened Jul 10, 2025 by nictru Loading…
Update blastn module
#8765 opened Jul 10, 2025 by AnnaNoren Loading…
3 of 17 tasks
3
Container for FASTQSCREEN_FASTQSCREEN should include bismark
#8758 opened Jul 5, 2025 by fbnrst • Draft
10 of 12 tasks
1
4
New module: bascule
#8751 opened Jul 4, 2025 by elena-buscaroli Loading…
17 tasks
1
11
new module: pvactools/pvacseq
#8748 opened Jul 3, 2025 by KondratievaOlesya • Draft
1 of 17 tasks
1
Pvactools installvepplugin
#8744 opened Jul 2, 2025 by KondratievaOlesya Loading…
9 of 17 tasks
1
Update biocontainers/deeptools Docker tag to v3.5.6
#8738 opened Jul 1, 2025 by renovate bot Loading…
2 tasks
Update biocontainers/annosine2 Docker tag to v2.0.9
#8736 opened Jul 1, 2025 by renovate bot Loading…
2 tasks
Fix logic for gVCF vs. VCF
#8726 opened Jun 27, 2025 by lvclark Loading…
2
Update oras to https
#8724 opened Jun 27, 2025 by LouisLeNezet Loading…
17 tasks
@LouisLeNezet
5
downgrade multiqc version to accommodate ARM
#8717 opened Jun 25, 2025 by tobsecret Loading…
2 tasks done
7
Adding cnaqc tool module
#8714 opened Jun 25, 2025 by vvvirgy Loading…
17 tasks
1
1
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