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Pull requests: nf-core/modules

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Pull requests list

chore(deps): update biocontainers/cooler docker tag to v0.10.3
#7419 opened Feb 1, 2025 by renovate bot Loading…
2 tasks
chore(deps): update biocontainers/cnvkit docker tag to v0.9.12
#7418 opened Feb 1, 2025 by renovate bot Loading…
2 tasks
chore(deps): update dotnet monorepo
#7417 opened Feb 1, 2025 by renovate bot Loading…
2 tasks
@maxulysse @edmundmiller
add another clean-up step to GHA
#7416 opened Jan 31, 2025 by mirpedrol Loading…
1
run GHA on self-hosted runners by default or github after 2 retries
#7415 opened Jan 31, 2025 by mirpedrol Loading…
Update diff subworkflows
#7414 opened Jan 31, 2025 by suzannejin Loading…
17 tasks
2
add subworfklow + schema for references
#7412 opened Jan 31, 2025 by maxulysse Loading…
17 tasks
7
bump version to WIPERTOOLS 1.1.5 CI-issue continous integration issue
#7411 opened Jan 31, 2025 by mazzalab Loading…
5 tasks done
1
@mazzalab
MALT/BUILD: Start adding a2tax support
#7409 opened Jan 31, 2025 by jfy133 • Draft
17 tasks
don't run nf-test if only meta.yml was changed
#7406 opened Jan 31, 2025 by mashehu Loading…
Upgrade simpleaf to 0.19.0
#7405 opened Jan 31, 2025 by an-altosian Loading…
12 of 16 tasks
Use a TrueType font for plotting sequence names with last/dotplot.
#7404 opened Jan 31, 2025 by charles-plessy Loading…
15 of 17 tasks
1
Add db to output meta object for diamond/blastp
#7403 opened Jan 30, 2025 by erikrikarddaniel Loading…
2 of 17 tasks
5
Hifiadapterfilt
#7398 opened Jan 30, 2025 by Ge94 Loading…
14 of 17 tasks
1
Fix falco sample names
#7394 opened Jan 30, 2025 by MartinGrignard Loading…
1
should emit either tbi or csi
#7386 opened Jan 28, 2025 by tkchafin Loading…
17 tasks
index should be emitted as either tbi or csi
#7385 opened Jan 28, 2025 by tkchafin Loading…
17 tasks
Added nf-test for somalier/ancestry
#7380 opened Jan 27, 2025 by GallVp Loading…
Bump openms version to 3.3.0
#7373 opened Jan 27, 2025 by jonasscheid Loading…
11 of 17 tasks
2
Bulk sort environment yamls
#7372 opened Jan 27, 2025 by edmundmiller Loading…
@edmundmiller
2
Add whitelist parameter to kb module
#7369 opened Jan 26, 2025 by nictru Loading…
2
Update pb deepvariant
#7363 opened Jan 24, 2025 by blajoie Loading…
4 of 16 tasks
10
Update pb fq2bam
#7357 opened Jan 23, 2025 by gburnett-nvidia Loading…
2 of 17 tasks
2
fix and bump gfastats help wanted Extra attention is needed
#7320 opened Jan 16, 2025 by fellen31 • Draft
17 tasks
2
Update purecn/coverage to nf-test
#7308 opened Jan 15, 2025 by SPPearce Loading…
1
ProTip! What’s not been updated in a month: updated:<2025-01-01.