Upd subsample#296
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LouisLeNezet wants to merge 4 commits into
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PR checklist
Update subsampling subworkflow to use samtools/coverage.
This reduce quite a lot the file size compared to samtools/depth for full genome (x10Gb) and should also be faster.
The drawback is that you need to provide the region min and max when dealing with just part of chromosomes (as in the unit-test).
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).