Add ribocode to workflow mimicking ribotricer implementation #136
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| saveAs: { filename -> filename.equals('versions.yml') ? null : filename } | ||
| ], | ||
| [ | ||
| path: { "${params.outdir}/riboseq_qc/ribocode" }, |
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You could probably use some wildcards to condense the publishing logic
| ch_versions = ch_versions.mix(RIBOTRICER_DETECTORFS.out.versions) | ||
| } | ||
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| if (!params.skip_ribocode){ |
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Do we want to do it this way, or have it so that only this OR ribotricer is run? Will folks commonly want both?
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No tool is very reliable at this task so it is increasingly common to run multiple tools. Maybe down the line if more tools are added we'd add one or two local modules to homogenise the outputs
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add RiboCode for calling translated regions. - #132
workflows/riboseq/main.nfRunning
test_fullcurrentlyPR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).