Skip to content

Pull requests: nf-core/rnaseq

New pull request New
15 Open 870 Closed
15 Open 870 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Fix MultiQC sample name collisions with shared FASTQ filenames
#1659 opened Dec 10, 2025 by pinin4fjords Loading…
2 tasks
1
1
Fix duplicate flagstat files in MultiQC report
#1655 opened Dec 9, 2025 by pinin4fjords Loading…
1
1
fix(tximport): handle tx2gene files with extra columns
#1654 opened Dec 9, 2025 by pinin4fjords Loading…
2 tasks
1
test: reduce duplicate coverage in pipeline tests
#1648 opened Dec 4, 2025 by pinin4fjords Loading…
1
New module for contamination screening: Sylph
#1616 opened Oct 29, 2025 by egreenberg7 Loading…
3 of 11 tasks
7
Qc optimization
#1601 opened Aug 22, 2025 by edmundmiller Loading…
11 tasks
@edmundmiller
4
Correct typos in rnaseq DE analysis docs
#1569 opened Jun 10, 2025 by johnvusich Loading…
2 tasks done
1
Update to Nextflow 25.04
#1566 opened Jun 9, 2025 by bentsherman • Draft
2
ARM Megatests
#1529 opened Mar 26, 2025 by edmundmiller Loading…
@edmundmiller
12
Container configs
#1515 opened Mar 17, 2025 by edmundmiller Loading…
@edmundmiller
15
Try matthias' fix to download
#1439 opened Oct 23, 2024 by pinin4fjords • Draft
11 tasks
2
allow integer sample names
#1421 opened Oct 18, 2024 by idot Loading…
1 task
8
Update nextflow_schema.json
#1397 opened Oct 2, 2024 by rraadd88 Loading…
1 of 11 tasks
2
Copy optimized resources from Tower
#1209 opened Feb 6, 2024 by edmundmiller • Draft
@edmundmiller
4
Add NGSCheckMate Ready for review
#993 opened Mar 31, 2023 by SPPearce Loading…
6 of 9 tasks
9
ProTip! Find all pull requests that aren't related to any open issues with -linked:issue.