test with https over s3

nf-core · Jan 31, 2025 · 28440fa · 28440fa
1 parent 03f001f
commit 28440fa
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Showing 2 changed files with 12 additions and 12 deletions.
diff --git a/subworkflows/local/utils_references/tests/main.nf.test b/subworkflows/local/utils_references/tests/main.nf.test
@@ -13,13 +13,13 @@ nextflow_workflow {
                         genome:'GRCh38_chr22',
                         id:'GRCh38_chr22',
                         species:'Homo_sapiens',
-                        fasta:'\${params.igenomes_base}/Homo_sapiens/nf-core/references/testdata.GRCh38_chr22/Sequence/WholeGenomeFasta/genome.fasta',
+                        fasta:'\${params.igenomes_base}/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta',
                     ], []])
                 input[1] = []
                 input[2] = []
                 input[3] = 'fasta'
                 input[4] = 'species'
-                input[5] = 's3://nf-core-references/test_data/'
+                input[5] = 'https://raw.githubusercontent.com/nf-core/'
                 """
             }
         }
@@ -39,13 +39,13 @@ nextflow_workflow {
                         genome:'GRCh38_chr22',
                         id:'GRCh38_chr22',
                         species:'Homo_sapiens',
-                        fasta:'\${params.igenomes_base}/Homo_sapiens/nf-core/references/testdata.GRCh38_chr22/Sequence/WholeGenomeFasta/genome.fasta',
+                        fasta:'\${params.igenomes_base}/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta',
                     ], []])
-                input[1] = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta'
+                input[1] = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/chr21/sequence/genome.fasta'
                 input[2] = 'WBCel235'
                 input[3] = 'fasta'
                 input[4] = 'species'
-                input[5] = 's3://nf-core-references/test_data/'
+                input[5] = 'https://raw.githubusercontent.com/nf-core/'
                 """
             }
         }

diff --git a/subworkflows/local/utils_references/tests/main.nf.test.snap b/subworkflows/local/utils_references/tests/main.nf.test.snap
@@ -7,7 +7,7 @@
                         {
                             "id": "GRCh38_chr22"
                         },
-                        "/nf-core-references/test_data/Homo_sapiens/nf-core/references/testdata.GRCh38_chr22/Sequence/WholeGenomeFasta/genome.fasta"
+                        "/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta"
                     ]
                 ],
                 "1": [
@@ -23,7 +23,7 @@
                         {
                             "id": "GRCh38_chr22"
                         },
-                        "/nf-core-references/test_data/Homo_sapiens/nf-core/references/testdata.GRCh38_chr22/Sequence/WholeGenomeFasta/genome.fasta"
+                        "/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta"
                     ]
                 ],
                 "references_value": [
@@ -40,7 +40,7 @@
             "nf-test": "0.9.2",
             "nextflow": "24.10.4"
         },
-        "timestamp": "2025-01-31T13:12:57.867733238"
+        "timestamp": "2025-01-31T13:56:02.779937716"
     },
     "With params": {
         "content": [
@@ -50,7 +50,7 @@
                         {
                             "id": "GRCh38_chr22"
                         },
-                        "/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta"
+                        "/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/chr21/sequence/genome.fasta"
                     ]
                 ],
                 "1": [
@@ -66,7 +66,7 @@
                         {
                             "id": "GRCh38_chr22"
                         },
-                        "/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta"
+                        "/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/chr21/sequence/genome.fasta"
                     ]
                 ],
                 "references_value": [
@@ -83,6 +83,6 @@
             "nf-test": "0.9.2",
             "nextflow": "24.10.4"
         },
-        "timestamp": "2025-01-31T13:13:08.097955852"
+        "timestamp": "2025-01-31T13:55:00.387907176"
     }
-}
+}