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Pull requests: nf-core/scdownstream

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Pull requests list

Add option to exclude genes as candidate highly variable genes for integration
#230 opened Nov 7, 2025 by KallyopeComp Loading…
1
Update to new runner size syntax
#229 opened Nov 3, 2025 by mashehu Loading…
2
Important! Template update for nf-core/tools v3.4.1
#228 opened Oct 16, 2025 by nf-core-bot Loading…
Celltypist symbol col assignmnet fix
#222 opened Aug 27, 2025 by ECM893 • Draft
10 of 11 tasks
6
add differential expression subworkflow
#219 opened Aug 17, 2025 by an-altosian Loading…
3
Improve celltype-specific rankgenesgroups implementation
#217 opened Aug 10, 2025 by nictru • Draft
1
1
Fixed Conda dependency issues in environment.yml bug Something isn't working good first issue Good for newcomers
#211 opened Aug 2, 2025 by KurayiChawatama Loading…
3 of 11 tasks
@KurayiChawatama
31
implemented dynamic filtering option per #174
#204 opened Jul 18, 2025 by ctastad Loading…
2 of 11 tasks
1
Pin anndataR to v0.1.0
#197 opened Jun 23, 2025 by lazappi Loading…
1 of 11 tasks
2
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