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Pull requests: nf-core/seqinspector

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Pull requests list

Add MultiQC index section to navigate between reports
#135 opened Oct 27, 2025 by pontushojer Loading…
5 of 9 tasks
1
@maxulysse
7
Add sequali
#134 opened Oct 23, 2025 by pontushojer Loading…
9 of 11 tasks
1.1.0
2
Added optional Bwa index parameter to skip bwamem2 index for a faster output review requested
#132 opened Oct 15, 2025 by agrima2010 Loading…
11 tasks
1.0.0
@maxulysse
14
Adding Picard tools for QC metrics review requested
#128 opened Oct 1, 2025 by agrima2010 Loading…
4 of 11 tasks
1.0.0
@maxulysse
15
useage.md - remove references to nonexisting parameter
#124 opened Jul 22, 2025 by pontushojer Loading…
11 tasks
1.0.0
2
Sample naming fixes
#121 opened Jul 9, 2025 by pontushojer Loading…
11 tasks
1.0.0
1
2
Run FastqScreen with subsampled data if available
#120 opened Jul 9, 2025 by pontushojer Loading…
1 of 11 tasks
1.0.0
2
Change resource allocations
#115 opened Mar 26, 2025 by YukWoon Loading…
4 tasks done
1.0.0
7
Pipeline description in README documentation Improvements or additions to documentation
#111 opened Mar 26, 2025 by Patricie34 Loading…
11 tasks
1.0.0
6
Add long reads
#109 opened Mar 26, 2025 by TMAdams Loading…
9 of 11 tasks
1.1.0
8
Go through and validate test data + list of default steps
#108 opened Mar 26, 2025 by Patricie34 Loading…
11 tasks
1
Add functionality to parse run dir metadata enhancement New feature or request
#106 opened Mar 25, 2025 by kedhammar • Draft
11 tasks
1.0.0
@matrulda @kedhammar
2
Adds fq/lint for early validation of FASTQs
#67 opened Nov 2, 2024 by adamrtalbot Loading…
8 of 11 tasks
1.1.0
16
Adds FASTQE for summarising FASTQ scores as emojis
#66 opened Nov 1, 2024 by adamrtalbot Loading…
1 of 11 tasks
1.1.0
6
Seqkit
#59 opened Oct 29, 2024 by sarahjeeeze • Draft
10 of 11 tasks
13
add bbmap clumpify
#52 opened Oct 29, 2024 by erkutilaslan • Draft
11 tasks
1.1.0
2
Add kraken2 phylogenetic assignment subworkflow
#47 opened Oct 28, 2024 by ctuni Loading…
11 tasks done
1.1.0
1
24
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