✨ feat: Added ability to use .tar files instead of just .tar.gz files…

[FloWuenne]

Summary

This change improves pipeline usability by accepting both compressed and uncompressed tar archives without breaking existing functionality. 10x Genomics hosts a lot of their VISIUM HD data in .tar format and this PR will unlock the ability to use these https hosted files directly. Users can now provide FASTQ files in either .tar or .tar.gz format.

• Extended pipeline support from .tar.gz files to include both .tar and .tar.gz formats for FASTQ input files (which is already supported by UNTAR)
• Updated documentation to reflect the expanded tar format support with examples

🤖 Generated with https://claude.ai/code

[pinin4fjords]

Just suggesting simpler conditions, and we can use the branch fallback rather than inverting the condition.

[FloWuenne]

Thanks @pinin4fjords for adding a commit that should help to allow using the resume functionality. This was previously prevented by meta.remove('sample') and should hopefully now work properly via meta retrieval via get.

[cavenel]

Looks good!