v3.1.2 - Brass Boxfish Patch

v3.1.2 - Brass Boxfish Patch - [2025-01-20]

Template

• Bump nf-schema to 2.3.0 (#3401)
• Remove jinja formatting which was deleting line breaks (#3405)

Download

• Allow nf-core pipelines download -r to download commits (#3374)
• Fix faulty Download Test Action to ensure that setup and test run as one job and on the same runner (#3389)

Modules

• Fix bump-versions: only append module name if it is a dir and contains main.nf (#3384)

General

• manifest.author is not required anymore (#3397)
• Parameters schema validation: allow oneOf, anyOf and allOf with required (#3386)
• Run pre-comit when rendering template for pipelines sync (#3371)
• Fix sync GHA by removing quotes from parsed branch name (#3394)