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@nipreps

NeuroImaging PREProcessing toolS

NiPreps (NeuroImaging PREProcessing toolS)

Please visit www.nipreps.org for a more comprehensive description of this community. Don't forget to also learn about the sister initiative www.templateflow.org.

News and some discussions take place at the Nipreps GitHub discussions.

About

The current neuroimaging workflow has matured into a large chain of processing and analysis steps involving a large number of experts, across imaging modalities and applications. The development and fast adoption of fMRIPrep have revealed that neuroscientists need tools that simplify their research workflow, provide visual reports and checkpoints, and engender trust in the tool itself. The NiPreps framework extends fMRIPrep's approach and principles to new imaging modalities. The vision for NiPreps is to provide end-users (i.e., researchers) with applications that allow them to perform quality control smoothly and to prepare their data for modeling and statistical analysis.

Acknowledgments

This work is steered and maintained by the NiPreps Community. The development of this framework is supported the NIMH (RF1MH121867, RAP, OE).

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  1. fmriprep fmriprep Public

    fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    HTML 668 300

  2. dmriprep dmriprep Public

    dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    Python 67 25

  3. smriprep smriprep Public

    Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

    Python 139 42

  4. mriqc mriqc Public

    Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

    Python 318 134

Repositories

Showing 10 of 55 repositories
  • nifreeze Public

    A flexible framework for volume-wise artifact estimation and correction across multiple neuroimaging modalities (diffusion MRI, functional MRI, and PET)

    nipreps/nifreeze’s past year of commit activity
    Python 2 Apache-2.0 3 22 16 Updated May 3, 2025
  • mriqc Public

    Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

    nipreps/mriqc’s past year of commit activity
    Python 318 Apache-2.0 134 67 (10 issues need help) 5 Updated May 2, 2025
  • fmripost-rapidtide Public

    A BIDS App for running rapidtide on a preprocessed fMRI dataset.

    nipreps/fmripost-rapidtide’s past year of commit activity
    Python 3 Apache-2.0 1 13 0 Updated May 2, 2025
  • niworkflows Public

    Common workflows for MRI (anatomical, functional, diffusion, etc)

    nipreps/niworkflows’s past year of commit activity
    Python 96 Apache-2.0 53 64 (4 issues need help) 5 Updated May 2, 2025
  • fmriprep Public

    fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    nipreps/fmriprep’s past year of commit activity
    HTML 668 Apache-2.0 300 310 (24 issues need help) 13 Updated May 2, 2025
  • fmripost-aroma Public

    Run ICA-AROMA on fMRIPrep derivatives

    nipreps/fmripost-aroma’s past year of commit activity
    Python 11 Apache-2.0 3 20 2 Updated May 2, 2025
  • petprep Public

    PETPrep: A Robust Preprocessing Pipeline for PET Data

    nipreps/petprep’s past year of commit activity
    Python 2 Apache-2.0 1 1 0 Updated May 2, 2025
  • fmripost-phase Public

    An attempt at an fMRIPost workflow for handling phase data

    nipreps/fmripost-phase’s past year of commit activity
    Python 3 Apache-2.0 1 10 0 Updated May 1, 2025
  • fmripost-template Public template

    A generic fMRIPost workflow

    nipreps/fmripost-template’s past year of commit activity
    Python 0 Apache-2.0 3 6 4 Updated May 1, 2025
  • acres Public

    Resource-loading utility for Python

    nipreps/acres’s past year of commit activity
    Python 0 Apache-2.0 1 1 1 Updated May 1, 2025

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