1.7.1

1.7.1 (April 05, 2022)

Bug-fix release in the 1.7.x series.

• FIX: Allow ConvertScalarImageToRGBInputSpec.mask_file to be "none" (#3364)
• FIX: Use a more robust strategy for detecting ANTs version (#3444)
• FIX: Retry renaming pkl(z) files on failure (#3404)
• FIX: Escape metacharacters when parsing dcm2niix outputs (#3417)
• FIX: Import error for nipype.interfaces.dipy.base (#3414)
• FIX: ValueError when using ResourceMonitor (#3419)
• FIX: Improve error handling of CommandLine interfaces (#3395)
• FIX: Bugs in ApplyVDM interface (#3396)
• ENH: Add MRTrix3 interfaces (pared-down gh-3426) (#3445)
• ENH: Enable BidsDataGrabber to load saved layouts (#3421)
• ENH: ROBEX interface (#3443)
• ENH: Include several operations to ANTs's ImageMath interface, including ReplicateImage and ReplicateDisplacement (#3435)
• ENH: Add "GenericLabel" to antsRegistration interpolation option. (#3424)
• ENH: added Apply VDM functionality to FieldMap SPM interface (#3394)
• DOC: Side bar and main page fixes (#3397)
• TEST: Allow SVD columns to flip sign (#3405)
• MNT: rename dipy move_streamlines to transform_tracking_output (#3412)
• MNT: Test on Python 3.10 (#3438)
• MNT: Added ORCID iD (#3436)

New Contributors

• @fabioboh made their first contribution in #3394
• @qian587 made their first contribution in #3417
• @dmartindeblas made their first contribution in #3435
• @gaunab made their first contribution in #3421
• @ChristianHinge made their first contribution in #3364

Full Changelog: 1.7.0...1.7.1

1.7.0

1.7.0 (October 20, 2021)

New feature release in the 1.7.x series.

(Full changelog

• FIX: Make ants.LaplacianThickness output_image a string, not file (#3393)
• FIX: coord for mrconvert (#3369)
• FIX: antsRegistration allows the restrict_deformation to be float (#3387)
• FIX: Also allow errno.EBUSY during emptydirs on NFS (#3357)
• FIX: Removed exists=True from MathsOutput (#3385)
• FIX: Extension not extensions, after pybids v0.9 (#3380)
• ENH: Add CAT12 SANLM denoising filter (#3374)
• ENH: Add expected steps for FreeSurfer 7 recon-all (#3389)
• ENH: Stop printing false positive differences when logging cached nodes (#3376)
• ENH: Add new flags to MRtrix/preprocess.py (DWI2Tensor, MRtransform) (#3365)
• ENH: verbose input should not be hashed in ants.Registration (#3377)
• REF: Clean-up the BaseInterface run() function using context (#3347)
• DOC: Fix typo in README (#3386)
• STY: Make private member name consistent with the rest of them (#3346)
• MNT: Simplify interface execution and better error handling of Node (#3349)
• MNT: Add user name and email to Docker to appease git/annex/datalad (#3378)
• CI: Update CircleCI machine image (#3391)

1.5.1

1.5.1 (August 16, 2020)

Bug-fix release in the 1.5.x series.

This release includes small updates to ANTs utilities that lie somewhere between bug fixes and enhancements.

(Full changelog)

• FIX: Warn for min/max_ver traits when tool version can't be parsed (#3241)
• FIX: Serialize all interface arguments when exporting workflows (#3240)
• FIX: Permit identity transforms in list of transforms given to ants.ApplyTransforms (#3237)
• FIX: ANTs' utilities revision - bug fixes and add more operations to ants.ImageMath (#3236)
• DOC: Skip BIDSDataGrabber doctest if pybids is missing (#3224)

1.5.0

1.5.0 (June 03, 2020)

New feature release in the 1.5.x series.

In this release, the example scripts have been split out into their own package: niflow-nipype1-examples.

(Full changelog)

• FIX: volterra_expansion_order documentation error (#3213)
• FIX: BET incorrect output paths (#3214)
• FIX: Terminal output in report.rst spreads one line per character (#3220)
• FIX: Allow parsing freesurfer 7 version string (#3216)
• FIX: Use PackageInfo to get NiftyReg version (#3194)
• FIX: Partial rollback of N4BiasFieldCorrection (#3188)
• FIX: ANTs' tools maintenance overhaul (#3180)
• FIX: load_resultfile crashes if open resultsfile from crashed job (#3182)
• FIX: FSL model.py make multiple F-tests (#3166)
• ENH: Restore ants.legacy interfaces (#3222)
• ENH: Add "TruncateImageIntensity" operation to ants.utils.Image.Math (#3210)
• ENH: SPM NewSegment multi-channel segmentation (#3162)
• ENH: Add reverse-ordered transform lists to ants.Registration outputs (#3192)
• ENH: Improve workflow connect performance (#3184)
• ENH: Add ConstrainedSphericalDeconvolution interface to replace EstimateFOD for MRtrix3's dwi2fod (#3176)
• ENH: Detect values for EulerNumber interface (#3173)
• ENH: Remove examples from repository (#3172)
• TEST: Clean up tests (#3195)
• TEST: Mock terminal output before testing changing default value (#3193)
• REF: make invocations of python and pytest consistent with the one used/desired python (#3208)
• REF: Prefer math.gcd to hand-rolled Euclid's algorithm (#3177)
• REF: Removed all uses of numpy_mmap (#3121)
• DOC: Sphinx 3 compatibility (#3206)
• DOC: Update links, typos in contributing guide (#3160)
• DOC: Update SelectFiles docstring to match actual behavior (#3041)
• DOC: Updated .zenodo.json file (#3167)
• DOC: Update .zenodo.json (#3165)
• MNT: Permit recent nilearns (#2841)
• MNT: Test Python 3.8 (#3154)
• MNT: Restore ReadTheDocs (#3207)
• MNT: Update Zenodo ordering based on commit count (#3169)

1.4.2

1.4.2 (February 14, 2020)

Bug-fix release in the 1.4.x series. Contains patches to accommodate API changes in Traits 6.0.

Full changelog

• FIX: Allow fsl.MultipleRegressDesign to create multiple F-tests (#3166)
• FIX: Reliably parse SGE job IDs in the presence of warnings (#3168)
• FIX: Move TraitType import, handle API change for NoDefaultSpecified (#3159)

1.4.1

1.4.1 (January 27, 2020)

Full changelog

• FIX: DataSink to S3 buckets (#3130)
• FIX: improve version checking for nodes of workflows (#3152)
• FIX: mapnode to generate result file when crashes in single node mode (#3143)
• FIX: Can't seem to import workflows from niflows in CircleCI (#3134)
• FIX: Repair aftermath of docs refactor (#3133)
• FIX: change ANTS number_of_time_steps from Float to Int (#3118)
• DOC: Revise generation of examples to work in RTD (#3132)
• DOC: Bring examples generation back to doc/conf.py (#3131)
• DOC: Documentation overhaul (#3124)
• DOC: Deep revision of documentation building (#3120)
• DOC: Deduplicate code for Sphinx's APIdoc generation (#3119)
• MNT: Update requirements.txt post-1.4 (#3153)

1.4.0

1.4.0 (December 20, 2019)

Full changelog

• FIX: Mark strings containing regex escapes as raw (#3106)
• ENH: Pacify DeprecationWarnings caused by nibabel 3 pre-release (#3099)
• ENH: Allow Nipype configuration directory to be specified with NIPYPE_CONFIG_DIR environment variable (#3073)
• ENH: Add options and outputs to fsl.Eddy interface (#3034)
• ENH: Add skull_file output to fsl.BET interface (#3095)
• RF: Drop various remaining compatibilities for Python < 3.5 (#2831)
• DOC: Add Python 2 statement to README, reference maintenance branch in CONTRIBUTING (#3115)
• DOC: Miss underline before cmd in example code (#3107)
• STY: Black (#3096)
• MNT: Set junit_family to suppress pytest warning (#3111)
• MNT: Fix Dorota Jarecka ORCID (#3100)
• MNT: Drop Python 2 support (#2654)

1.3.1

1.3.1 (November 12, 2019)

• FIX: Restore checking traits or bunch (#3094)

1.3.0

1.3.0 (November 11, 2019)

Full changelog

• FIX: Fixed typo in QwarpInputSpec Trait description (#3079)
• FIX: Restore AFNICommand._get_fname, required by some interfaces (#3071)
• FIX: Remove asynchronous chdir callback (#3060)
• FIX: Minimize scope for directory changes while loading results file (#3061)
• ENH: Minimize the number of calls to _load_results when populating inputs (#3075)
• ENH: Refactor savepkl/loadpkl - add a window for loadpkl to wait for the file (#3089)
• ENH: Add "ExportFile" interface as simple alternative to "DataSink" (#3054)
• ENH: Allow nipype.cfg in cwd to be read even if ~/.nipype does not exist (#3072)
• ENH: Add precommit information for contributors and pre-commit style (#3063)
• ENH: Delay etelemetry for non-interactive sessions, report bad versions (#3049)
• ENH: Run memoized check_version at REPL import, Node/Workflow/Interface init (#30)
• RF: Provide functions to augment old Path.mkdir, Path.resolve methods (#3050)
• RF: Redirect nipype.workflows to niflow.nipype1.workflows (#3067)
• TST: Skip dcm2niix test if data fails to download (#3059)
• TST: dcm2niix test fix (#3058)
• MAINT: Drop Python 3.4 support (#3062)
• CI: make specs on Travis (#3066)

1.3.0-rc1

1.3.0-rc1 (October 8, 2019)

Release candidate for Nipype 1.3.0, released off-schedule to enable testing and allow downstream projects to move off of 1.2.3.

Final release scheduled for Monday, October 28.

Full changelog

• FIX: Restore AFNICommand._get_fname, required by some interfaces (#3071)
• FIX: Remove asynchronous chdir callback (#3060)
• FIX: Minimize scope for directory changes while loading results file (#3061)
• ENH: Add precommit information for contributors and pre-commit style (#3063)
• ENH: Delay etelemetry for non-interactive sessions, report bad versions (#3049)
• ENH: Run memoized check_version at REPL import, Node/Workflow/Interface init (#30)
• RF: Provide functions to augment old Path.mkdir, Path.resolve methods (#3050)
• RF: Redirect nipype.workflows to niflow.nipype1.workflows (#3067)
• TST: Skip dcm2niix test if data fails to download (#3059)
• TST: dcm2niix test fix (#3058)
• MAINT: Drop Python 3.4 support (#3062)
• CI: make specs on Travis (#3066)