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    76 repositories

    • TNBC_mutation_analysis

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Feb 6, 2026Feb 6, 2026

    • i-etl

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Feb 3, 2026Feb 3, 2026

    • ReRa

      Public
      Supervised Relevance-Redundancy assessments for feature selection in omics-based classification
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Jan 30, 2026Jan 30, 2026

    • CRIS_single-sample

      Public
      Single-sample classifiers for CRIS on colorectal cancer data
      bioinformaticsoncogenomics
      R
      •
      GNU General Public License v3.0
      •1•5•1•0•Updated Jan 30, 2026Jan 30, 2026

    • YoyoMut

      Public
      Repository for YoyoMut: yoyo and fixated mutations recognition and 3D protein visualization
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 15, 2026Jan 15, 2026

    • open-ConvMut

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 21, 2025Dec 21, 2025

    • open-recombinhunt

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Dec 6, 2025Dec 6, 2025

    • pklearn

      Public
      Python package for prior knowledge-guided models
      Python
      •0•0•0•0•Updated Nov 3, 2025Nov 3, 2025

    • AviFluHunt-repo

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 30, 2025Sep 30, 2025

    • open-flu-warning

      Public
      Python
      •0•0•0•0•Updated Sep 29, 2025Sep 29, 2025

    • flu-warning-system

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Aug 20, 2025Aug 20, 2025

    • GIS-weighted_LASSO

      Public
      Integrative approach to feature selection combining weighted LASSO and prior biological knowldge
      lassofeature-selectionclassificationgene-expression-profilesprior-knowledge
      Jupyter Notebook
      •1•5•0•0•Updated May 24, 2025May 24, 2025

    • NMTF_for_subtyping

      Public
      Computational workflow for breast cancer subtyping using NMTF, node embeddings, and ML classifiers. Applied to TCGA data, as presented in CIBB 2023 (LNCS 14513)…
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated May 13, 2025May 13, 2025

    • BioGAN

      Public
      Python
      •1•1•0•1•Updated May 8, 2025May 8, 2025

    • prior_tree_models_repo

      Public
      Prior knowledge-guided tree-based models
      regressionfeature-selectionclassificationprior-knowledgegene-expression-analysis
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 15, 2025Apr 15, 2025

    • pktree

      Public
      Python package for prior knowledge integration in tree-based models
      Python
      •
      MIT License
      •0•1•0•0•Updated Feb 21, 2025Feb 21, 2025

    • GSEACompass

      Public
      A minimalistic app to run GSEA, pre-ranked GSEA and, mostly, do post-analysis elaboration on the results.
      electronpythondatatablesgseagseapy
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Feb 12, 2025Feb 12, 2025

    • MULTI-STAR

      Public
      Multi-label subtyping and advanced recognition on cancer patients
      Jupyter Notebook
      •0•0•0•0•Updated Jan 12, 2025Jan 12, 2025

    • cmls2024

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Dec 3, 2024Dec 3, 2024

    • ARDS_H-CPAP_ML

      Public
      Machine learning-based forecast of Helmet-CPAP therapy failure in Acute Respiratory Distress Syndrome patients
      machine-learningcovid-19ardspredicting-h-cpap-therapy-failure-in-ards-patientsh-cpap
      0•0•0•0•Updated Nov 9, 2024Nov 9, 2024

    • CMLS

      Public
      HTML
      •
      MIT License
      •0•0•0•20•Updated Jul 9, 2024Jul 9, 2024

    • WALS

      Public
      Repository for the website of the International Workshop of Web Applications for Life Sciences, co-located with ICWE 2022
      HTML
      •
      MIT License
      •0•0•0•0•Updated Jun 11, 2024Jun 11, 2024

    • RGMQL

      Public
      RGMQL: Scalable and interoperable computing of heterogeneous omics big data and metadata in R/Bioconductor
      javapackagerbioconductorscalable-computinginteropeable-computingheterogeneous-omics-data
      HTML
      •2•1•0•0•Updated Feb 13, 2024Feb 13, 2024

    • GeCo

      Public
      geco webpage
      JavaScript
      •0•0•0•6•Updated Nov 8, 2023Nov 8, 2023

    • nmtf-web

      Public
      Documentation
      Python
      •1•0•0•0•Updated Sep 3, 2023Sep 3, 2023

    • GMQL-Sync

      Public
      Shell
      •0•0•0•2•Updated Jul 22, 2023Jul 22, 2023

    • TFHAZ

      Public
      R package to identify Transcription Factor High Accumulation DNA Zones
      R
      •0•0•0•0•Updated Jul 10, 2023Jul 10, 2023

    • Metadata-Manager

      Public
      Public dataset downloader for GMQL framework
      datasettransformergmql-importer
      Scala
      •
      Apache License 2.0
      •4•7•1•7•Updated Jul 7, 2023Jul 7, 2023

    • DSBot

      Public
      Python
      •3•0•1•0•Updated May 3, 2023May 3, 2023

    • VarSum

      Public
      Data summarization tool for 1000 Genomes Project data
      Python
      •
      GNU General Public License v3.0
      •1•0•0•1•Updated May 1, 2023May 1, 2023