Repositories list

• FLAIR_Tract

  Public
  FLAIR Tractography without subject-specific anatomical context.

  Python

  •0•0•0•0•Updated Mar 19, 2026Mar 19, 2026

• Jshi-topoloss-nnunet

  Public

  MASILab/Jshi-topoloss-nnunet’s past year of commit activity
  custom unet with topo loss trainer, experiments?

  Python

  •

  Apache License 2.0

  •2.3k•0•0•0•Updated Mar 13, 2026Mar 13, 2026

• xnat-staging-pipeline

  Public
  Manifest-driven pipeline to stage symlink-heavy DICOM trees into Subject/Session/Series structure, optionally zip sessions per subject, sync reliably with resum…

  0•0•0•0•Updated Feb 27, 2026Feb 27, 2026

• AtlasToDiffusionReg

  Public
  singularity to register an atlas to the diffusion space of a subject

  Jupyter Notebook

  •0•2•1•0•Updated Feb 26, 2026Feb 26, 2026

• insertion_network

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Feb 13, 2026Feb 13, 2026

• PreQual

  Public

  MASILab/PreQual’s past year of commit activity
  An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images

  qualitymriassurance+ 2

  qualitymriassurancepreprocessingdiffusion

  Python

  •

  Other

  •10•54•1•2•Updated Feb 11, 2026Feb 11, 2026

• surface_distance

  Public
  Code for calculating mean absolute surface distance.

  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 11, 2026Feb 11, 2026

• Informatics_ADSP

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Feb 11, 2026Feb 11, 2026

• spherical_deep_fixel

  Public
  DeepFixel: Deep learning-based identification of crossing fiber bundle elements

  Python

  •

  MIT License

  •2•0•0•0•Updated Feb 11, 2026Feb 11, 2026

• SPIE2026_DermIDS

  Public
  Shell

  •0•1•0•0•Updated Feb 6, 2026Feb 6, 2026

• ADSP_AutoQA

  Public
  Automated QA for ADSP processing

  Python

  •

  MIT License

  •2•5•2•1•Updated Jan 21, 2026Jan 21, 2026

• SATLossCustom

  Public
  modified SATLoss to fit for eye CT

  Python

  •

  MIT License

  •3•0•0•0•Updated Jan 15, 2026Jan 15, 2026

• DisCo_ext

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Dec 18, 2025Dec 18, 2025

• BRAID

  Public
  BRain Age Identification from Diffusion MRI (BRAID)

  computer-visiondeep-learningmri

  computer-visiondeep-learningmri

  Python

  •

  Other

  •2•4•0•0•Updated Dec 12, 2025Dec 12, 2025

• Weather_Fetcher

  Public
  Python

  •0•0•0•0•Updated Nov 12, 2025Nov 12, 2025

• nf-neuro-fitbir

  Public
  Roff

  •8•0•0•0•Updated Oct 31, 2025Oct 31, 2025

• mri2avatar

  Public
  Can we turn whole-head MRIs to photorealistic avatars?

  Python

  •

  MIT License

  •0•3•0•0•Updated Oct 10, 2025Oct 10, 2025

• open_dive

  Public
  Open Diffusion Visualization for Everyone - BrainHack Vandy 2025

  Python

  •

  MIT License

  •8•9•5•1•Updated Aug 20, 2025Aug 20, 2025

• cornn_tractography

  Public
  Convolutional-recurrent neural networks approximate diffusion tractography from T1-weighted MRI and associated anatomical context

  deep-learningdiffusion-mritractography+ 2

  deep-learningdiffusion-mritractographyt1-weighted-mriconvolutional-recurrent-neural-network

  Python

  •2•21•0•0•Updated Aug 6, 2025Aug 6, 2025

• SynBOLD-DisCo

  Public
  Synthetic BOLD images for distortion correction of fMRI without additional calibration scans

  deep-learningdistortion-correctionfmri+ 1

  deep-learningdistortion-correctionfmribold

  Python

  •

  MIT License

  •8•32•1•0•Updated Jul 31, 2025Jul 31, 2025

• Synb0-DISCO

  Public
  Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps

  deep-learningdistortion-correctiondiffusion-mri

  deep-learningdistortion-correctiondiffusion-mri

  Python

  •

  MIT License

  •33•85•2•1•Updated Jul 31, 2025Jul 31, 2025

• deep_fixel

  Public
  DeepFixel: Deep learning-based identification of crossing fiber bundle elements

  Python

  •

  MIT License

  •2•0•0•0•Updated Jul 29, 2025Jul 29, 2025

• slantticv_qc

  Public
  Statistical test methods for SLANT-TICV

  mribids-formatmri-segmentation+ 1

  mribids-formatmri-segmentationt1-weighted-mri

  Python

  •1•0•0•0•Updated Jul 26, 2025Jul 26, 2025

• brain_ventricle_icu

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jul 10, 2025Jul 10, 2025

• beyond_fa_3r

  Public
  Shell

  •

  MIT License

  •1•0•0•0•Updated Jul 1, 2025Jul 1, 2025

• DeepN4

  Public
  Jupyter Notebook

  •1•4•1•0•Updated Jun 28, 2025Jun 28, 2025

• tensor_metric_infonce_inference

  Public
  Python

  •1•0•0•0•Updated Jun 24, 2025Jun 24, 2025

• beyond_fa_pca

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Jun 23, 2025Jun 23, 2025

• beyond_fa_md

  Public
  beyond fa challenge using md metric

  Python

  •

  MIT License

  •1•0•0•0•Updated Jun 23, 2025Jun 23, 2025

• GeneralQATool

  Public
  non-bids QA tool

  HTML

  •

  MIT License

  •0•0•0•0•Updated Jun 21, 2025Jun 21, 2025