Repositories list

• annotation-and-image-markup

  Public archive
  Annotation and Image Markup (AIM) is the first project to propose and create a standard means of adding information and knowledge to an image in a clinical envi…

  C++

  •

  Other

  •2727 forks•3838 stars•11 issue•22 pull requests•Updated Jul 27, 2026Jul 27, 2026

• gdc-docs

  Public
  Official repository for GDC User Guides in Markdown format

  JavaScript

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  Apache License 2.0

  •4545 forks•6868 stars•22 issues•1616 pull requests•Updated Jun 18, 2026Jun 18, 2026

• lexevs-remote

  Public
  A remote (RMI) access wrapper around LexEVS.

  Java

  •

  Other

  •99 forks•22 stars•11 issue•00 pull requests•Updated Jun 18, 2026Jun 18, 2026

• nci-metathesaurus-browser

  Public
  The NCI Metathesaurus (NCIm) Browser is a web-based terminology browser that allows users to browse and search the NCI Metathesaurus, a biomedical terminology d…

  Java

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  Other

  •77 forks•66 stars•00 issues•11 pull request•Updated Jun 18, 2026Jun 18, 2026

• lexevs

  Public
  The LexEVS Terminology Service.

  Java

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  Other

  •2121 forks•1515 stars•00 issues•88 pull requests•Updated Jun 18, 2026Jun 18, 2026

• lexevs-service

  Public
  A CTS2 Framework Service Plugin based on LexEVS

  Java

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  Other

  •99 forks•66 stars•00 issues•99 pull requests•Updated Jun 18, 2026Jun 18, 2026

• BEMT

  Public archive
  Biobank Economic Modeling Tool

  Groovy

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  BSD 3-Clause "New" or "Revised" License

  •33 forks•00 stars•00 issues•00 pull requests•Updated Jun 18, 2026Jun 18, 2026

• CTAT_testkit

  Public archive
  small testkit for checking CTAT module executions

  Makefile

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 18, 2026Jun 18, 2026

• ctat-genome_guided_reconstruction

  Public archive
  Use genome-guided reconstruction of transcripts

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 18, 2026Jun 18, 2026

• docker-ctat-galaxy

  Public archive
  Galaxy Docker build for Trinity CTAT tools

  Python

  •11 fork•11 star•00 issues•00 pull requests•Updated Jun 18, 2026Jun 18, 2026

• ctat-metagenomics

  Public archive
  Python

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  Other

  •00 forks•22 stars•00 issues•00 pull requests•Updated Jun 18, 2026Jun 18, 2026

• Cancer-Research-Data-Commons-Framework-Documentation

  Public archive
  Repository of documentation and technical artifacts related to the NCI CRDC

  00 forks•00 stars•00 issues•00 pull requests•Updated Jun 18, 2026Jun 18, 2026

• commonlibrary

  Public archive
  Created as per request NCI-RITM0065579

  00 forks•00 stars•00 issues•00 pull requests•Updated Jun 18, 2026Jun 18, 2026

• automation

  Public archive
  Created as per request NCI-RITM0065579 as part of SVN to GitHub migration

  JavaScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 18, 2026Jun 18, 2026

• bioconductor

  Public archive
  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 18, 2026Jun 18, 2026

• cbiit-ahp3-software

  Public archive
  Ruby

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 18, 2026Jun 18, 2026

• bioconductor_v1

  Public archive
  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 18, 2026Jun 18, 2026

• tcga-sandbox

  Public archive
  HTML

  •22 forks•11 star•00 issues•00 pull requests•Updated Jun 18, 2026Jun 18, 2026

• tcga-sandbox-v1

  Public archive
  HTML

  •77 forks•22 stars•00 issues•00 pull requests•Updated Jun 18, 2026Jun 18, 2026

• cptac3

  Public archive
  To support the Clinical Proteomic Tumor Analysis Consortium (CPTAC) program

  22 forks•00 stars•00 issues•00 pull requests•Updated Jun 18, 2026Jun 18, 2026

• clinical-trials-search

  Public archive
  JavaScript

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  Other

  •1818 forks•1919 stars•1717 issues•00 pull requests•Updated Jun 18, 2026Jun 18, 2026

• slncky

  Public archive
  slncky is a tool for lncRNA discovery from RNA-Seq data. slncky filters a high-quality set of noncoding transcripts, discovers lncRNA orthologs, and characteri…

  Python

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  MIT License

  •77 forks•00 stars•00 issues•00 pull requests•Updated Jun 18, 2026Jun 18, 2026

• CDR-Lite

  Public archive
  Generic version of the CDR, updated to remove study-specific references

  Groovy

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  BSD 2-Clause "Simplified" License

  •22 forks•11 star•00 issues•00 pull requests•Updated Jun 18, 2026Jun 18, 2026

• nci-edit-tab

  Public archive
  evs' nci edittab plugin for the protege 5-based code

  BSD 3-Clause "New" or "Revised" License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 18, 2026Jun 18, 2026

• nci-protege5

  Public archive
  evs umbrella project for protege 5-based editing software

  BSD 3-Clause "New" or "Revised" License

  •44 forks•00 stars•00 issues•00 pull requests•Updated Jun 18, 2026Jun 18, 2026

• nci-diff-CDISC

  Public archive
  diff specific for CDISC reports

  Java

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  BSD 3-Clause "New" or "Revised" License

  •88 forks•33 stars•00 issues•22 pull requests•Updated Jun 18, 2026Jun 18, 2026

• Trinity_CTAT_galaxy

  Public archive
  Files needed for Galaxy tools used to run Trinity_CTAT workflows.

  JavaScript

  •55 forks•33 stars•00 issues•11 pull request•Updated Jun 18, 2026Jun 18, 2026

• CDR

  Public archive
  caHUB CDR v6.3

  Groovy

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  BSD 3-Clause "New" or "Revised" License

  •22 forks•22 stars•22 issues•00 pull requests•Updated Jun 18, 2026Jun 18, 2026

• cgr-PoDA

  Public archive
  R

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  BSD 3-Clause "New" or "Revised" License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 18, 2026Jun 18, 2026

• cgr-pathOlogist

  Public archive
  MATLAB

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  BSD 3-Clause "New" or "Revised" License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jun 18, 2026Jun 18, 2026