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31 repositories

CImpact
Public
Python
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Other
•1•10•0•0•Updated Jan 14, 2025Jan 14, 2025
ExplainClinicalBERT
Public
To explain clinical BERT model predictions, we present an approach which leverages integrated gradients to attribute events in medical records that lead to an outcome prediction.
bert clinical-data explainable-ai integrated-gradients bert-fine-tuning
Python
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Other
•0•2•0•0•Updated Jan 13, 2025Jan 13, 2025
enact-pipeline
Public
Repository for ENACT pipeline for end-to-end analysis of Visium HD data
Jupyter Notebook
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Other
•5•22•10•0•Updated Jan 13, 2025Jan 13, 2025
PMCB-scGFT
Public
A single-cell RNA-seq data generative model
R
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Other
•1•6•0•0•Updated Jan 11, 2025Jan 11, 2025
SKAI
Public
SKAI is a toolbox for analyzing reaction kinetics mechanisms. It includes a reaction network generator and Bayesian inference modeling. Ideal for researchers in chemical kinetics.
Jupyter Notebook
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Other
•0•0•0•0•Updated Jan 11, 2025Jan 11, 2025
sharp-bounds-for-continuous-treatment-effects
Public
Snapshot of the implementation used to generate figures and numerical results from the paper "Sharp Bounds for Continuous-Valued Treatment Effects with Unobserved Confounders", Baitairian et al. (2024).
sensitivity-analysis causal-inference confounder continuous-treatment average-potential-outcome
R
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Other
•0•0•0•0•Updated Jan 10, 2025Jan 10, 2025
CD-spectra-classification
Public
Python
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Other
•0•0•0•0•Updated Dec 19, 2024Dec 19, 2024
RWD-Proxy-Endpoint-Models
Public
Jupyter Notebook
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Other
•0•2•0•0•Updated Dec 16, 2024Dec 16, 2024
mRNA-LM
Public
Python
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Other
•1•0•0•0•Updated Dec 5, 2024Dec 5, 2024
dewdrop
Public
Jupyter Notebook
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Other
•0•0•0•0•Updated Dec 4, 2024Dec 4, 2024
PyEvoCell
Public
Python
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Other
•0•1•0•0•Updated Nov 20, 2024Nov 20, 2024
spatialone-pipeline
Public
Spatial One
python bioinformatics spatialomics spatial-biology
Python
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Other
•3•18•0•0•Updated Oct 31, 2024Oct 31, 2024
emrflow
Public
EMRFlow is designed to simplify the process of running PySpark jobs on Amazon EMR (Elastic Map Reduce).
Python
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Apache License 2.0
•0•14•0•0•Updated Oct 2, 2024Oct 2, 2024
LipoBART
Public
Jupyter Notebook
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Other
•1•8•1•0•Updated Oct 2, 2024Oct 2, 2024
PMCB-GWAS_multi-omics_prioritization
Public
R
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Other
•0•2•0•0•Updated Sep 30, 2024Sep 30, 2024
Large_Scale_Multicellular_Modelling_For_RA
Public
Python
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Other
•0•0•0•0•Updated Aug 8, 2024Aug 8, 2024
DMPK-US-ML-mTPA
Public
Jupyter Notebook
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Other
•0•0•0•0•Updated Jun 27, 2024Jun 27, 2024
CodonBERT
Public
Repository for mRNA Paper and CodonBERT publication.
Python
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Other
•20•117•7•0•Updated Jun 12, 2024Jun 12, 2024
RDCS-bulkRNASeq-pseudo_ordering
Public
Jupyter Notebook
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Other
•0•1•0•0•Updated Jun 7, 2024Jun 7, 2024
crai
Public
Python
•0•1•0•0•Updated May 31, 2024May 31, 2024
IDD-Collective-Intelligence
Public
Jupyter Notebook
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Other
•0•1•0•0•Updated May 3, 2024May 3, 2024
CrossAttOmics
Public
Python
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Other
•1•0•0•0•Updated Apr 15, 2024Apr 15, 2024
LMR-SurfaceID
Public
Repo contains source code of the SurfaceID paper
cc-6cl900 apm-0074337
Python
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Other
•5•15•5•0•Updated Mar 13, 2024Mar 13, 2024
indication-finding
Public
Repository for "Comparing Methods for Identifying Novel Indications of Drugs using Electronic Health Records" publication
Python
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Other
•0•3•0•0•Updated Jan 26, 2024Jan 26, 2024
eLNNpairedCov
Public
An R package to detect differentially expressed genes based on data from paired design
R
•0•0•0•0•Updated Jan 11, 2024Jan 11, 2024
DDS-RoFormerMIL
Public
Python
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Other
•1•2•0•0•Updated Nov 13, 2023Nov 13, 2023
Alien
Public
Jupyter Notebook
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Other
•2•12•0•0•Updated Oct 20, 2023Oct 20, 2023
IDD-papers-fragrl
Public
Repo for fragrl code for publication
Python
•5•9•1•0•Updated Sep 6, 2023Sep 6, 2023
IDD-papers-generative-applicability-domains
Public
Repository for the code associated with the paper Impact of applicability domains by Maxime Langevin et al.
cc-f40ccl2041
Jupyter Notebook
•4•11•1•0•Updated Jul 11, 2023Jul 11, 2023
IDD-Papers-AI4DR
Public
Repository for the code associated with the paper 'AI4DR: Development and Implementation of an Annotation System for High-Throughput Dose-Response Experiments'
Jupyter Notebook
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Other
•0•5•0•0•Updated Dec 19, 2022Dec 19, 2022