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    • benchmark

      Public
      TeX
      MIT License
      3100Updated Jun 11, 2021Jun 11, 2021
    • Chloroplast landscape for different plant species
      MIT License
      01140Updated Mar 10, 2021Mar 10, 2021
    • Perl
      MIT License
      84170Updated May 1, 2019May 1, 2019
    • Parses the FastG files and extracts target assemblies
      Perl
      MIT License
      0020Updated May 1, 2019May 1, 2019
    • docker

      Public
      Build scripts for docker images to run chloroExtractor
      Dockerfile
      MIT License
      0000Updated Apr 8, 2019Apr 8, 2019
    • Tests for our chloroExtractor
      Perl
      MIT License
      0000Updated Apr 8, 2019Apr 8, 2019
    • A docker solution for Fast-Plast (https://github.com/mrmckain/Fast-Plast)
      Dockerfile
      0000Updated Oct 15, 2018Oct 15, 2018
    • A docker solution for GetOrganelle (https://github.com/Kinggerm/GetOrganelle)
      Dockerfile
      0000Updated Oct 1, 2018Oct 1, 2018
    • A docker solution for IOGA (https://github.com/holmrenser/IOGA)
      Dockerfile
      0000Updated Sep 27, 2018Sep 27, 2018
    • A docker solution for NOVOPlasty (https://github.com/ndierckx/NOVOPlasty)
      Dockerfile
      0000Updated Sep 26, 2018Sep 26, 2018
    • A docker solution for ORG.Asm (https://git.metabarcoding.org/org-asm/org-asm)
      MIT License
      0000Updated Sep 26, 2018Sep 26, 2018
    • This container is used to screen for new chloroplasts
      Dockerfile
      MIT License
      0000Updated Jul 24, 2018Jul 24, 2018
    • A shuffle program for FASTQ files
      Perl
      MIT License
      2730Updated Jul 11, 2018Jul 11, 2018
    • Docker base image for our chloroExtractor Docker container
      Shell
      MIT License
      0000Updated Jul 9, 2018Jul 9, 2018
    • simulate

      Public
      Protocol to generate simulated sequence reads for evaluation of chloroExtractor
      Shell
      MIT License
      0000Updated Sep 22, 2017Sep 22, 2017
    • bats

      Public
      Bash Automated Testing System
      Shell
      MIT License
      512000Updated Sep 4, 2017Sep 4, 2017
    • All stuff concerning the logo of our chloroExtractor
      MIT License
      1000Updated Aug 30, 2017Aug 30, 2017
    • annoBTD

      Public
      Annotation software for Verdant.
      Perl
      1000Updated Aug 12, 2016Aug 12, 2016
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