Repositories list

• bioformats2raw

  Public
  Bio-Formats image file format to raw format converter

  ome-zarr-converter

  Java

  •

  GNU General Public License v2.0

  •35•86•16•5•Updated Mar 17, 2025Mar 17, 2025

• omero-zarr-pixel-buffer

  Public
  OMERO Zarr Pixel Buffer Implementation

  Java

  •

  GNU General Public License v2.0

  •4•0•2•0•Updated Mar 14, 2025Mar 14, 2025

• raw2ometiff

  Public
  Raw format to OME-TIFF converter

  Java

  •

  GNU General Public License v2.0

  •22•50•1•1•Updated Mar 6, 2025Mar 6, 2025

• qupath-extension-omero-web

  Public
  QuPath extension to work with images through OMERO's web API

  Java

  •

  GNU General Public License v3.0

  •11•0•1•0•Updated Mar 5, 2025Mar 5, 2025

• omero2pandas

  Public
  Python

  •

  GNU General Public License v3.0

  •2•5•3•0•Updated Feb 20, 2025Feb 20, 2025

• omero-ms-pixel-buffer

  Public
  OMERO pixel buffer Vert.x asynchronous microservice server

  Java

  •

  GNU General Public License v2.0

  •6•2•0•1•Updated Feb 17, 2025Feb 17, 2025

• omero-ms-image-region

  Public
  OMERO image region Vert.x asynchronous microservice server

  Java

  •

  GNU General Public License v2.0

  •12•1•3•7•Updated Feb 17, 2025Feb 17, 2025

• omero-ms-thumbnail

  Public
  OMERO thumbnail Vert.x asynchronous microservice server

  Java

  •

  GNU General Public License v2.0

  •9•1•1•0•Updated Feb 17, 2025Feb 17, 2025

• omero-ms-core

  Public
  OMERO Vert.x microservice core

  Java

  •

  GNU General Public License v2.0

  •6•2•1•0•Updated Feb 13, 2025Feb 13, 2025

• omero-user-token

  Public
  OMERO user token

  Python

  •

  GNU General Public License v2.0

  •5•3•1•0•Updated Feb 4, 2025Feb 4, 2025

• CellProfiler

  Public
  An open-source application for biological image analysis

  Python

  •

  Other

  •390•0•0•0•Updated Dec 2, 2024Dec 2, 2024

• core

  Public
  Python

  •

  Other

  •24•0•0•0•Updated Dec 2, 2024Dec 2, 2024

• python-bioformats

  Public
  Read and write life sciences file formats

  Python

  •

  Other

  •47•0•0•0•Updated Nov 8, 2024Nov 8, 2024

• prokaryote

  Public
  CellProfiler’s Java dependencies

  Java

  •

  GNU General Public License v3.0

  •11•0•0•0•Updated Nov 8, 2024Nov 8, 2024

• zarr2zarr

  Public
  Java

  •

  GNU General Public License v2.0

  •4•0•2•0•Updated Sep 13, 2024Sep 13, 2024

• libjpeg-turbo-java

  Public
  libjpeg-turbo Java build

  Java

  •2•0•1•2•Updated Aug 5, 2024Aug 5, 2024

• github-action-ssh

  Public
  🔐 Simple GitHub Action to run commands on a remote server using SSH.

  JavaScript

  •

  MIT License

  •82•0•0•0•Updated Jul 4, 2024Jul 4, 2024

• zeroc-ice-py-linux-aarch64

  Public
  Builds ZeroC Ice Python manylinux_2_28 wheel packages for Linux aarch64.

  Dockerfile

  •0•0•0•0•Updated Jun 20, 2024Jun 20, 2024

• zeroc-ice-ubuntu2404-x86_64

  Public
  Ubuntu 24.04 x86_64 ZeroC Ice Builder

  Dockerfile

  •0•0•0•0•Updated Jun 19, 2024Jun 19, 2024

• ome-omero-roitool

  Public
  OME and OMERO ROI tool

  Java

  •

  GNU General Public License v2.0

  •7•5•0•0•Updated Jun 7, 2024Jun 7, 2024

• NGFF-Converter

  Public
  NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF

  Java

  •

  GNU General Public License v2.0

  •7•24•6•1•Updated Jun 4, 2024Jun 4, 2024

• zeroc-ice-py-macos-universal2

  Public
  Builds ZeroC Ice Python wheel packages for macOS universal2 (x86_64 + arm64)

  2•0•0•0•Updated Mar 25, 2024Mar 25, 2024

• zeroc-ice-py-win-x86_64

  Public
  Builds ZeroC Ice Python wheel packages for Windows (x86_64, Visual Studio 2019)

  0•0•0•0•Updated Mar 25, 2024Mar 25, 2024

• zeroc-ice-py-patches

  Public
  Patches for ZeroC Ice Python builds

  2•0•0•0•Updated Mar 25, 2024Mar 25, 2024

• jxrlib

  Public
  C

  •8•10•6•1•Updated Mar 15, 2024Mar 15, 2024

• zeroc-ice-py-linux-x86_64

  Public
  Builds ZeroC Ice Python manylinux_2_28 wheel packages for Linux x86_64.

  Dockerfile

  •2•1•0•0•Updated Feb 2, 2024Feb 2, 2024

• omero-ldaptool

  Public
  Command line tool for working with OMERO and LDAP

  Java

  •

  GNU General Public License v2.0

  •3•0•0•0•Updated Jan 15, 2024Jan 15, 2024

• zeroc-ice-rhel9-x86_64

  Public
  Builds ZeroC Ice packages for RHEL 9 x86_64.

  Dockerfile

  •1•0•0•0•Updated Nov 30, 2023Nov 30, 2023

• zeroc-ice-py-macos-x86_64

  Public
  Builds Zeroc Ice Python wheel packages for macOS x86_64

  3•0•0•0•Updated Nov 30, 2023Nov 30, 2023

• solid-color

  Public
  🎨 SolidJS color pickers from Sketch, Photoshop, Chrome, Github, Twitter & more

  TypeScript

  •

  MIT License

  •3•0•0•0•Updated Nov 29, 2023Nov 29, 2023