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    94 repositories

    • vdj-multiomic-integration

      Public
      Platforma block: aggregates per-cell data onto VDJ clonotypes (BEAM)
      Python
      •0•0•0•1•Updated Jul 23, 2026Jul 23, 2026

    • feature-integration

      Public
      Platforma block: per-cell feature/antigen assignment from feature-barcode reads (BEAM)
      Python
      •0•0•0•1•Updated Jul 23, 2026Jul 23, 2026

    • generation-probability

      Public
      TypeScript
      •0•0•0•0•Updated Jul 23, 2026Jul 23, 2026

    • synthetic-repertoire-profiler

      Public
      Synthetic Repertoire Profiler Block
      TypeScript
      •0•0•0•0•Updated Jul 23, 2026Jul 23, 2026

    • antibody-tcr-lead-selection

      Public
      Top Antibodies Block
      TypeScript
      •0•1•0•5•Updated Jul 23, 2026Jul 23, 2026

    • clonotype-browser

      Public
      TypeScript
      •0•1•0•2•Updated Jul 22, 2026Jul 22, 2026

    • mixcr-amplicon-alignment

      Public
      TypeScript
      •0•0•0•12•Updated Jul 20, 2026Jul 20, 2026

    • mixcr-scfv-clonotyping

      Public
      MiXCR Clonotyping for Single-chain Variable fragments
      Vue
      •0•0•0•10•Updated Jul 20, 2026Jul 20, 2026

    • repertoire-diversity

      Public
      Repertoire Diversity Analysis Block
      TypeScript
      •0•0•0•3•Updated Jul 20, 2026Jul 20, 2026

    • table

      Public
      Generic Table Block
      Vue
      •0•0•0•3•Updated Jul 20, 2026Jul 20, 2026

    • embedding-clustering

      Public
      Python
      •0•0•0•2•Updated Jul 20, 2026Jul 20, 2026

    • runenv-python-3

      Public
      Python 3 package for Platforma Backend (run environment)
      Python
      •0•0•0•4•Updated Jul 20, 2026Jul 20, 2026

    • tcr-clustering

      Public
      R
      •0•0•0•1•Updated Jul 17, 2026Jul 17, 2026

    • clonotype-clustering

      Public
      Clonotype Clustering Block
      Python
      •1•0•0•10•Updated Jul 17, 2026Jul 17, 2026

    • clonotype-enrichment

      Public
      Clonotype Enrichment Block
      Python
      •0•0•0•8•Updated Jul 17, 2026Jul 17, 2026

    • fastq-reader

      Public
      Python
      •0•0•0•0•Updated Jul 17, 2026Jul 17, 2026

    • rarefaction

      Public
      TypeScript
      •0•0•0•2•Updated Jul 17, 2026Jul 17, 2026

    • cdr3-spectratype

      Public
      TypeScript
      •0•1•0•2•Updated Jul 17, 2026Jul 17, 2026

    • vj-gene-usage

      Public
      V/J Gene Usage
      TypeScript
      •0•0•0•3•Updated Jul 17, 2026Jul 17, 2026

    • sequence-embeddings

      Public
      Compute learned per-sequence vector representations for peptide and antibody/TCR datasets
      Python
      •0•0•0•0•Updated Jul 17, 2026Jul 17, 2026

    • mixcr-clonotyping

      Public
      MiXCR Clonotyping V2
      TypeScript
      •0•2•0•17•Updated Jul 16, 2026Jul 16, 2026

    • clonotype-space

      Public
      Clonotype Space Block
      Python
      •0•0•0•3•Updated Jul 15, 2026Jul 15, 2026

    • antibody-sequence-liabilities

      Public
      Antibody Sequence Liabilities Block
      Python
      •0•1•0•5•Updated Jul 14, 2026Jul 14, 2026

    • vdj-integration

      Public
      VDJ Integration Block
      Python
      •0•0•0•1•Updated Jul 14, 2026Jul 14, 2026

    • paratope-clustering

      Public
      Paratope Clustering Block
      Python
      •0•0•0•2•Updated Jul 14, 2026Jul 14, 2026

    • titeseq-analysis

      Public
      Ranks antibody variants by binding affinity from titeseq data
      Python
      •0•0•0•2•Updated Jul 13, 2026Jul 13, 2026

    • immune-assay-data

      Public
      TypeScript
      •0•0•0•1•Updated Jul 13, 2026Jul 13, 2026

    • mixcr-shm-trees

      Public
      MiXCR Somatic hypermutation (SHM) Trees Block
      bcr-seqsomatic-hypermutations
      bcr-seqsomatic-hypermutations
      Vue
      •0•3•0•5•Updated Jul 13, 2026Jul 13, 2026

    • repertoire-mutation-heatmap

      Public
      Repertoire Mutation Heatmap Block
      TypeScript
      •0•1•0•1•Updated Jul 8, 2026Jul 8, 2026

    • sequence-properties

      Public
      Compute physicochemical properties (charge, GRAVY, pI, MW, ε) for peptide and antibody/TCR lead ranking
      Python
      •0•0•0•2•Updated Jul 6, 2026Jul 6, 2026
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