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    127 repositories

    • scipion-em-phenix

      Public
      wrappers for phenix package
      atom
      atom
      Python
      •
      GNU General Public License v3.0
      •1•2•3•5•Updated Jul 24, 2026Jul 24, 2026

    • scipion-em-reliontomo

      Public
      Plugin to use Relion tomography programs within the Scipion framework
      tomo
      tomo
      Python
      •
      GNU General Public License v3.0
      •3•2•7•2•Updated Jul 24, 2026Jul 24, 2026

    • scipion-em-kiharalab

      Public
      Utilities from Kihara Lab
      scipionkiharalab
      scipionkiharalab
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jul 24, 2026Jul 24, 2026

    • scipion-em-smartscope

      Public
      Plugin to manage the interaction with the SmartScope framework.
      Python
      •
      GNU General Public License v3.0
      •0•4•2•2•Updated Jul 24, 2026Jul 24, 2026

    • scipion-em-chimera

      Public
      Plugin to use Chimera programs within the Scipion framework
      atom
      atom
      Python
      •
      GNU General Public License v3.0
      •3•2•3•3•Updated Jul 23, 2026Jul 23, 2026

    • scipion-em

      Public
      Base Scipion plugin defining objects and protocols for EM
      spacoretomo
      spacoretomo
      Python
      •
      GNU General Public License v3.0
      •7•8•24•7•Updated Jul 23, 2026Jul 23, 2026

    • scipion-em-carbonara

      Public
      Scipion plugin that allows to run CARBonAra, a deep learning method for samplings sequences based on structure atomic coordinates
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 23, 2026Jul 23, 2026

    • scipion-pyworkflow

      Public
      Underlying pyworkflow module for the Scipion framework
      core
      core
      Python
      •
      GNU General Public License v3.0
      •8•5•40•1•Updated Jul 22, 2026Jul 22, 2026

    • scipion-em-tomo

      Public
      Base tomography Scipion plugin with data model definition
      tomo
      tomo
      Python
      •
      GNU General Public License v3.0
      •5•9•41•4•Updated Jul 22, 2026Jul 22, 2026

    • scipion-em-prody

      Public
      Scipion plugin for ProDy
      Python
      •
      GNU General Public License v3.0
      •1•4•7•2•Updated Jul 21, 2026Jul 21, 2026

    • scipion-em-deepfinder

      Public
      Scipion plugin for deepfinder (tomography picker)
      tomo
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•3•2•1•Updated Jul 21, 2026Jul 21, 2026

    • metadata-viewer

      Public
      Generic metadata viewer
      core
      core
      Python
      •
      GNU General Public License v3.0
      •1•0•3•1•Updated Jul 21, 2026Jul 21, 2026

    • docs

      Public
      Scipion documentation repository
      other
      other
      Python
      •
      GNU General Public License v3.0
      •6•1•2•3•Updated Jul 20, 2026Jul 20, 2026

    • scipion-em-pytom_tm

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 20, 2026Jul 20, 2026

    • scipion-em-fidder

      Public
      tomo
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•0•0•1•Updated Jul 20, 2026Jul 20, 2026

    • scipion-em-aretomo

      Public
      Plugin to use AreTomo within the Scipion framework
      tomo
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•1•2•2•Updated Jul 20, 2026Jul 20, 2026

    • scipion-em-mica

      Public
      Plugin to use MICA in Scipion
      Python
      •
      GNU General Public License v3.0
      •0•0•0•2•Updated Jul 16, 2026Jul 16, 2026

    • scipion-em-imod

      Public
      Plugin to use some of the Tomography tools from IMOD in Scipion
      tomo
      tomo
      Python
      •
      GNU General Public License v3.0
      •2•2•21•3•Updated Jul 15, 2026Jul 15, 2026

    • scipion-em-emantomo

      Public
      Plugin to use Eman2 tomography programs within the Scipion framework
      tomo
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•2•7•1•Updated Jul 15, 2026Jul 15, 2026

    • scipion-em-dynamo

      Public
      Dynamo tomography plugin for Scipion
      tomo
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•1•5•1•Updated Jul 15, 2026Jul 15, 2026

    • scipion-em-hax

      Public
      Python
      •
      GNU General Public License v3.0
      •0•1•1•4•Updated Jul 15, 2026Jul 15, 2026

    • scipion-em-mapq

      Public
      atom
      atom
      Python
      •
      GNU General Public License v3.0
      •0•0•1•3•Updated Jul 15, 2026Jul 15, 2026

    • scipion-em-relion

      Public
      Plugin to use Relion SPA programs within the Scipion framework
      spa
      spa
      Python
      •
      GNU General Public License v3.0
      •2•3•27•6•Updated Jul 14, 2026Jul 14, 2026

    • scipion-em-ardecon

      Public
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 10, 2026Jul 10, 2026

    • scipion-em-cryosparc2

      Public
      Plugin to use cryoSPARC2 programs within the Scipion framework
      spa
      spa
      Python
      •
      GNU General Public License v3.0
      •2•2•15•3•Updated Jul 9, 2026Jul 9, 2026

    • scipion-em-bindcraft

      Public
      Scipion plugin to design proteins using BindCraft (pipeline based on AlphaFold2 backpropagation, MPNN, and PyRosetta )
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 2, 2026Jul 2, 2026

    • scipion-em-emprot

      Public
      Plugin to use EMProt in Scipion
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 26, 2026Jun 26, 2026

    • scipion-em-motioncorr

      Public
      Plugin to use Motioncor program within the Scipion framework
      spatomo
      spatomo
      Python
      •
      GNU General Public License v3.0
      •0•1•4•2•Updated Jun 24, 2026Jun 24, 2026

    • scipion-em-esm

      Public
      Plugin to integrate ESM protein structure prediction software
      Python
      •
      GNU General Public License v3.0
      •0•0•0•1•Updated Jun 18, 2026Jun 18, 2026

    • scipion-em-nextpyp

      Public
      Plugin to use nextPYP within the Scipion framework
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 17, 2026Jun 17, 2026
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