Repositories list

• health-admin-bench

  Public
  TypeScript

  •

  Apache License 2.0

  •1212 forks•2222 stars•00 issues•33 pull requests•Updated Jun 12, 2026Jun 12, 2026

• MetricMatch

  Public
  Metric Match: A Subset Selection Approach to Evaluating LLM Judge Reliability

  Python

  •00 forks•11 star•00 issues•00 pull requests•Updated Jun 8, 2026Jun 8, 2026

• CARE

  Public
  Python

  •00 forks•22 stars•00 issues•00 pull requests•Updated Jun 7, 2026Jun 7, 2026

• femr

  Public
  FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health records

  healthcareelectronic-health-recordsself-supervised-learning+ 1

  healthcareelectronic-health-recordsself-supervised-learningfoundation-models

  Python

  •

  Apache License 2.0

  •3333 forks•178178 stars•66 issues•33 pull requests•Updated May 25, 2026May 25, 2026

• ehrshot-website

  Public
  Public website for EHRSHOT

  SCSS

  •

  MIT License

  •11 fork•22 stars•00 issues•00 pull requests•Updated Mar 5, 2026Mar 5, 2026

• medhelm

  Public
  Python

  •00 forks•44 stars•11 issue•33 pull requests•Updated Feb 23, 2026Feb 23, 2026

• medalign-website

  Public
  Landing page and website for the MedAlign project

  HTML

  •

  MIT License

  •22 forks•00 stars•00 issues•22 pull requests•Updated Feb 9, 2026Feb 9, 2026

• meds_reader

  Public
  A high-performance database and Python reader interface for MEDS datasets

  healthcareehrelectronic-health-record+ 2

  healthcareehrelectronic-health-recordmedsfoundation-models

  C++

  •

  Apache License 2.0

  •22 forks•2020 stars•00 issues•00 pull requests•Updated Jan 26, 2026Jan 26, 2026

• factehr-website

  Public
  Website for FactEHR: A Dataset for Evaluating Factuality in Clinical Notes Using LLMs

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 22, 2025Dec 22, 2025

• factehr

  Public
  Fact Verification for Clinical Notes with LLMs

  benchmarkingehrclinical-notes+ 3

  benchmarkingehrclinical-notesclinical-nlpfact-verificationllms

  Python

  •44 forks•4343 stars•00 issues•00 pull requests•Updated Dec 22, 2025Dec 22, 2025

• hf_ehr

  Public
  Training HuggingFace models on EHR data

  machine-learninghealthcareelectronic-health-records+ 1

  machine-learninghealthcareelectronic-health-recordsfoundation-models

  Jupyter Notebook

  •

  Apache License 2.0

  •1010 forks•5252 stars•66 issues•00 pull requests•Updated Nov 2, 2025Nov 2, 2025

• aplusml

  Public
  APLUS ML = A Python Library for Usefulness Simulations of Machine Learning models

  Jupyter Notebook

  •

  Apache License 2.0

  •55 forks•2828 stars•44 issues•00 pull requests•Updated Oct 16, 2025Oct 16, 2025

• mimic_tutorial

  Public
  Python

  •11 fork•55 stars•00 issues•00 pull requests•Updated Jul 7, 2025Jul 7, 2025

• inspect-website

  Public
  SCSS

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 4, 2025Jul 4, 2025

• med-nota

  Public
  Python

  •33 forks•1515 stars•11 issue•00 pull requests•Updated Jun 11, 2025Jun 11, 2025

• opt-paradox

  Public
  Python

  •11 fork•99 stars•00 issues•00 pull requests•Updated Jun 10, 2025Jun 10, 2025

• TIMER

  Public
  Python

  •11 fork•2222 stars•00 issues•00 pull requests•Updated Jun 9, 2025Jun 9, 2025

• ehrshot-benchmark

  Public
  A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)

  Jupyter Notebook

  •

  Apache License 2.0

  •3030 forks•226226 stars•44 issues•00 pull requests•Updated Jun 6, 2025Jun 6, 2025

• INSPECT_public

  Public
  INSPECT dataset/benchmark paper, accepted by NeurIPS 2023

  Python

  •

  Apache License 2.0

  •88 forks•5353 stars•1212 issues•00 pull requests•Updated May 20, 2025May 20, 2025

• medalign

  Public
  MedAlign is a clinician-generated dataset for instruction following with electronic medical records.

  benchmarkinghealthcareehr+ 4

  benchmarkinghealthcareehrelectronic-health-recordsinstruction-followingfoundation-modelsllms

  MIT License

  •99 forks•102102 stars•00 issues•00 pull requests•Updated May 17, 2025May 17, 2025

• tte-pretraining

  Public
  Code for the paper "Time-to-event pretraining for 3D medical imaging"

  Python

  •00 forks•99 stars•11 issue•00 pull requests•Updated May 8, 2025May 8, 2025

• med-s1

  Public
  s1: Simple test-time scaling

  Jupyter Notebook

  •

  Apache License 2.0

  •757757 forks•22 stars•00 issues•00 pull requests•Updated Apr 11, 2025Apr 11, 2025

• clinical_trial_patient_matching

  Public
  Zero-shot clinical trial matching with LLMs

  Python

  •55 forks•1919 stars•00 issues•00 pull requests•Updated Mar 1, 2025Mar 1, 2025

• motor_tutorial

  Public
  Tutorial repository for the official MOTOR release

  Jupyter Notebook

  •

  Apache License 2.0

  •00 forks•1616 stars•00 issues•00 pull requests•Updated Feb 22, 2025Feb 22, 2025

• clinical_trial_patient_matching-website

  Public
  Public facing website for zero-shot CT patient matching paper

  JavaScript

  •00 forks•44 stars•00 issues•00 pull requests•Updated Feb 19, 2025Feb 19, 2025

• shahlab-blog

  Public
  Shah Lab Jekyll website

  HTML

  •

  MIT License

  •11 fork•11 star•00 issues•00 pull requests•Updated Dec 11, 2024Dec 11, 2024

• meds_reader_paper_code

  Public
  C++

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 9, 2024Nov 9, 2024

• torch_hawk

  Public
  C++

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 2, 2024Nov 2, 2024

• Clinfo.AI

  Public
  This is Clinfo.AI Demo Instruction

  Jupyter Notebook

  •

  MIT License

  •1010 forks•3737 stars•11 issue•00 pull requests•Updated Aug 20, 2024Aug 20, 2024

• slurmtool

  Public
  SLURM helper

  Python

  •00 forks•22 stars•00 issues•00 pull requests•Updated Aug 5, 2024Aug 5, 2024