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Achievement: Pair ExtraordinaireAchievement: Pull Shark

Achievements

Achievement: Pair ExtraordinaireAchievement: Pull Shark

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paddyharker1005/README.md

Bio

Currently a Bioinformatician at the CRUK National Biomarker Centre. I am a BSc Biochemistry and MSc Bioinformatics graduate from the University of Edinburgh. I am interested in genomics and epigenomics in the context of complex diseases such as cancer.

Programming languages

  • R
  • Python
  • Bash
  • SQL (basic)
  • PHP (basic)

Workflow managers

  • Nextflow
  • Snakemake (basic)

Popular repositories Loading

  1. BSc_Scerevisiae_RBP_motifs_in_Calbicans_2021 BSc_Scerevisiae_RBP_motifs_in_Calbicans_2021 Public

    Analysis of S. cerevisiae RBP motifs in of CDS and UTRs of C.albicans genes

    HTML 1 1

  2. MSc_CancerEnhancers_2022 MSc_CancerEnhancers_2022 Public

    Analysis scripts used for SOX2/SOX9 ChIP-seq data processing and integration on the Eddie Mark 3 HPC cluster.

    Shell

  3. BPSM_BLAST_tool_exam2021 BPSM_BLAST_tool_exam2021 Public

    A Python3 BLAST programme created for the 3 hour BPSM course exam capable of performing all components of a BLAST analysis.

    Python

  4. BPSM_RNA-seq_pipeline_MSc_assignment1 BPSM_RNA-seq_pipeline_MSc_assignment1 Public

    An RNA-seq pipeline written with bash scripts for an MSc assignment

    Shell

  5. BPSM_protein_sequence_analysis_pipeline_MSc_assignment2 BPSM_protein_sequence_analysis_pipeline_MSc_assignment2 Public

    A Python3 pipeline that, based on a user-defined protein family and taxonomic group, retrieves relevant full protein sequences from the NCBI protein database and performs multiple protein-specific …

    Python

  6. FGT_microarray_pipeline_MSc_assignment1 FGT_microarray_pipeline_MSc_assignment1 Public

    An R pipeline for processing and analysing mouse microarray data using tools from the Bioconductor suite.

    R