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python-publish.yml
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docs: finalize mutant examples across merge and analysis sections .github/workflows/python-publish.yml #64: Commit ae89bb4 pushed by paulshamrat
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docs: add mutant simulation examples to README Section 3.2 .github/workflows/python-publish.yml #63: Commit ab3fad4 pushed by paulshamrat
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fix: implement skip logic for stability check to prevent crash on emp… .github/workflows/python-publish.yml #62: Commit 41da984 pushed by paulshamrat
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style: sort imports in cli.py to satisfy CI linting .github/workflows/python-publish.yml #61: Commit 0e81669 pushed by paulshamrat
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chore: move heavy MD dependencies to optional section for CI stability .github/workflows/python-publish.yml #60: Commit 5a0bef0 pushed by paulshamrat
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fix: make modeller imports lazy to ensure CI compatibility .github/workflows/python-publish.yml #59: Commit 4dc89ab pushed by paulshamrat
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fix: implement lazy imports to ensure --help works without heavy depe… .github/workflows/python-publish.yml #58: Commit d1f5f32 pushed by paulshamrat
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style: apply ruff formatting to modular scripts .github/workflows/python-publish.yml #57: Commit aac5e3d pushed by paulshamrat
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fix: use absolute paths for checkpoint detection to improve reliabili… .github/workflows/python-publish.yml #56: Commit 2f33036 pushed by paulshamrat
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fix: improve folder resolution to prevent redundant replica folder cr… .github/workflows/python-publish.yml #55: Commit 31c54c4 pushed by paulshamrat
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docs: restore visibility of standard workflow commands while keeping … .github/workflows/python-publish.yml #54: Commit 4417341 pushed by paulshamrat
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docs: add warning that manual installation is not for standard Colab use .github/workflows/python-publish.yml #53: Commit 160cbbf pushed by paulshamrat
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chore: remove local egg-info from tracking and update gitignore .github/workflows/python-publish.yml #52: Commit 97ea95b pushed by paulshamrat
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Final code cleanup: fix pyupgrade linting errors .github/workflows/python-publish.yml #51: Commit aa2cf9c pushed by paulshamrat
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Modernize Ruff configuration and automate linting rules .github/workflows/python-publish.yml #50: Commit 45d59eb pushed by paulshamrat
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Restore missing constant and fix CI/CD linting errors .github/workflows/python-publish.yml #49: Commit 7cc1132 pushed by paulshamrat
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Prioritize CWD in search paths (fixes folder jumping bug) .github/workflows/python-publish.yml #48: Commit 1851f53 pushed by paulshamrat
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Implement portable project root resolution (fixes MyDrive default issue) .github/workflows/python-publish.yml #47: Commit 862b851 pushed by paulshamrat
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Fix README example paths and filenames .github/workflows/python-publish.yml #46: Commit 2ceb061 pushed by paulshamrat
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Update installation guide with Modeller license warning .github/workflows/python-publish.yml #45: Commit 438a499 pushed by paulshamrat
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Add prominent link to Read the Docs manual .github/workflows/python-publish.yml #44: Commit 621c26c pushed by paulshamrat
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Final Gold Standard Cleanup and Badge Fixes .github/workflows/python-publish.yml #43: Commit a33496b pushed by paulshamrat
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Fix documentation config formatting .github/workflows/python-publish.yml #42: Commit 1e6f9d8 pushed by paulshamrat
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Add Documentation and Issues badges to metadata table .github/workflows/python-publish.yml #41: Commit c2c1af7 pushed by paulshamrat
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Update Release badge to track git tags .github/workflows/python-publish.yml #40: Commit a2846a7 pushed by paulshamrat
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