Use createPlDataTableV3

[erohinaelena]

No description provided.

[gemini-code-assist]

Code Review

This pull request migrates the summaryTable output to use createPlDataTableV3, refactoring the column selection and visibility logic while also updating several SDK and internal package dependencies. The review feedback identifies two potential regressions: first, the new enrichment-based selector may exclude signal columns that were previously included if they possess additional axes; second, File-type columns that were explicitly filtered out in the previous implementation are now included by the discovery process and require a specific visibility rule to remain hidden.

[gemini-code-assist]

The use of mode: "enrichment" with maxHops: 0 in the selector only discovers columns whose axes are a subset of the anchor axes (kdCol). In the previous implementation, signalCols (from signalPf) were included explicitly without this restriction. If signalCols have additional axes (e.g., they are per-concentration data as suggested by the comments), they will no longer be discovered and will be missing from the table. Consider using a selector that includes extensions or explicitly adding these columns if they are required for the "export per-concentration data" feature mentioned in the comments.

[gemini-code-assist]

The previous implementation explicitly filtered out columns with valueType: "File". The new discovery-based approach will include them if they match the anchor axes, making them appear in the column picker as optional (due to the last visibility rule). To maintain the previous behavior of hiding File columns, you should add an explicit visibility rule.

    return createPlDataTableV3(ctx, {
      tableState: ctx.data.tableState,
      columns: {
        anchors: { main: kdCol.spec },
        selector: { mode: "enrichment", maxHops: 0 },
      },
      displayOptions: {
        visibility: [
          // Plot-only sentinels: keep fully hidden even in this table.
          {
            match: (spec) =>
              spec.name === "pl7.app/vdj/kdPlotPosition" ||
              spec.name === "pl7.app/vdj/hillPlotPosition",
            visibility: "hidden",
          },
          // Hide File columns
          {
            match: (spec) => spec.valueType === "File",
            visibility: "hidden",
          },
          // Own outputs that the workflow hides from downstream pickers
          // (fitFailureReason, signal columns) should be visible in this table.
          // The sentinel names above are matched first, so they are not affected.
          {
            match: (spec) =>
              !!spec.annotations?.["pl7.app/trace"]?.includes("milaboratories.titeseq-analysis") &&
              spec.annotations?.["pl7.app/table/visibility"] === "hidden",
            visibility: "default",
          },
          // Columns from other blocks: available in the column picker, hidden by default.
          {
            match: (spec) =>
              !spec.annotations?.["pl7.app/trace"]?.includes("milaboratories.titeseq-analysis"),
            visibility: "optional",
          },
        ],
      },
    });