Merge pull request #168 from popsim-consortium/update_requirements

Update requirements.txt and some CI config

.github/workflows/docs.yml

@@ -8,16 +8,16 @@ on:
 
 jobs:
   build-deploy-docs:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-24.04
 
     steps:
       - uses: actions/checkout@v3
       - uses: actions/setup-python@v4
         with:
-          python-version: "3.10"
+          python-version: "3.12"
 
       - name: Install dependencies
-        run: pip install -r requirements.txt
+        run: pip install -r requirements_CI.txt
 
       - name: Build Docs
         run: make -C docs

.github/workflows/tests.yml

@@ -14,16 +14,16 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: [ubuntu-20.04, windows-2022, macos-11]
+        os: [ubuntu-24.04, windows-2022, macos-14]
     steps:
       - uses: actions/checkout@v2
       - uses: actions/setup-python@v2
         with:
-          python-version: 3.7
+          python-version: 3.12
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
-          python -m pip install -r requirements.txt
+          python -m pip install -r requirements_CI.txt
       - name: Tests for reference implementation
         run: |
           cd reference_implementation

docs/tutorial.md

@@ -9,27 +9,28 @@ kernelspec:
   language: python
   name: python3
 
-substitutions:
-  example: |
-    ``````{card}
-    :class-header: sd-bg-dark sd-text-light
-    Example LABEL
-    ^^^
-    `````{tab-set}
-    ````{tab-item} YAML
-    :class-label: pt-0
-    ```{literalinclude} ../examples/tutorial/example_LABEL.yaml
-    :language: yaml
-    ```
-    ````
-    ````{tab-item} Drawing
-    :class-label: pt-0
-    %DRAWING_TAG
-    ```{glue:} example_LABEL
-    ```
-    ````
-    `````
-    ``````
+myst:
+    substitutions:
+      example: |
+        ``````{card}
+        :class-header: sd-bg-dark sd-text-light
+        Example LABEL
+        ^^^
+        `````{tab-set}
+        ````{tab-item} YAML
+        :class-label: pt-0
+        ```{literalinclude} ../examples/tutorial/example_LABEL.yaml
+        :language: yaml
+        ```
+        ````
+        ````{tab-item} Drawing
+        :class-label: pt-0
+        %DRAWING_TAG
+        ```{glue:} example_LABEL
+        ```
+        ````
+        `````
+        ``````
 ---
 
 ```{code-cell}

requirements.txt

@@ -1,13 +1,12 @@
-jinja2==3.0.3
-jupyter-book==0.13.1
-sphinx==4.5.0
-sphinx_rtd_theme==1.0.0
-pytest==6.2.5
-pytest-cov==3.0.0
-jsonschema==3.2.0
-ruamel.yaml==0.17.17
-demes==0.2.2
-demesdraw==0.3.0
-hypothesis-jsonschema==0.20.1
-# See https://github.com/executablebooks/jupyter-book/issues/1902
-jupyter-server<2
+jinja2
+jupyter-book
+sphinx
+sphinx_rtd_theme
+pytest
+pytest-cov
+jsonschema
+ruamel.yaml
+demes
+demesdraw
+hypothesis-jsonschema
+jupyter-server