This repository was archived by the owner on Mar 3, 2020. It is now read-only.

Topic/ca timing#33

Open

cgaustin wants to merge 49 commits intodevelopfrom

topic/ca_timing

Commits on Jul 18, 2017

functions for testing with real data
clay austin
committed

Commits on Aug 8, 2017

Only use the detection bands for coefficient fitting during change detection
klsmith-usgs
committed
fix some looping
klsmith-usgs
committed

Commits on Aug 9, 2017

data org timing scripts
clay austin
committed
detect baseline: chip/pixel(rc) (-2094585/1682805)/(97/57), 1.617s
clay austin
committed
detect skip np.array on inputs: no improvement
clay austin
committed
detect remove pandas: chip/pixel(rc) (-2094585/1682805)/(97/57), 1.524
clay austin
committed
data org w/ rainbow+xarray 25.829 seconds
clay austin
committed
data org w/ lcmap-merlin 3.376 seconds
clay austin
committed
add QA_NAN value to default parameters
clay austin
committed
detect use map() in qa unpackqa: chip/pixel(rc) (-2094585/1682805)/(97/57), 1.467
clay austin
committed
detect use map() in procedures.py initialize fitter: chip/pixel(rc) (-2094585/1682805)/(97/57), 1.463
clay austin
committed

Commits on Aug 10, 2017

reduce lookups in procedures.py
clay austin
committed
merge kelcys band optimization
clay austin
committed

Commits on Aug 11, 2017

remove sklearn import from robust_fit, unused
clay austin
committed
ccd/qa.py map to list comp, np.array pointer
clay austin
committed
dot method pointers, move lasso inclusion
clay austin
committed

Commits on Aug 13, 2017

WIP extracting lasso code
clay austin
committed

Commits on Aug 15, 2017

lasso mods, add lasso cython
clay austin
committed

Commits on Aug 16, 2017

more precise Lasso import, half % less time spent in fitted_model
clay austin
committed
WIP tmask optimizations and cython
clay austin
committed

Commits on Aug 17, 2017

cythonization of the tmask pipeline
clay austin
committed

Commits on Aug 21, 2017

update gitignore, cleanup lasso extraction attempt
clay austin
committed
cythonization type defs
clay austin
committed

Commits on Aug 22, 2017

move robust_fit import to tmask module, slight improvement
clay austin
committed
move lasso import
clay austin
committed
proc_params to dict, move tmask import and coef func declaration
clay austin
committed
cdef tmask funcs, add pxd for header and type defs
clay austin
committed
moar cython func type defs
clay austin
committed

Commits on Aug 23, 2017

update travis config, setup.py for install with C extensions
clay austin
committed
add c files for dist
clay austin
committed
todo - learn how to spell install
clay austin
committed
add xarray to test deps
clay austin
committed

Commits on Aug 24, 2017

fix tests and setup.py
clay austin
committed
fix lasso coefficient test
clay austin
committed
fix travis distribution tag
clay austin
committed
add MANIFEST.in to package up pyx and pxd files, in event cython available
clay austin
committed

Commits on Aug 28, 2017

fix up the stability check some
klsmith-usgs
committed
Fix what bands get used for Tmask. There was a mismatch before related to the variogram.
klsmith-usgs
committed
small organizational and cleanup changes
clay austin
committed
move cython type defs into pxd files, cython to compile .py instead of pyx
clay austin
committed

Commits on Aug 29, 2017

cpdef tmask tmask
clay austin
committed
set dtype for observations to int16 instead of float, cpdef lasso coefficient_matrix for testing
clay austin
committed

Commits on Aug 30, 2017

update MANIFEST.in for cythons pure python model, set dtype to integers for detect input arrays
clay austin
committed
Merge branch 'optimization/band-regression' of github.com:USGS-EROS/lcmap-pyccd into topic/ca_timing
clay austin
committed
Merge branch 'feature/nt-to-dict' of github.com:USGS-EROS/lcmap-pyccd into topic/ca_timing
clay austin
committed
remove unused logging
clay austin
committed
undo move to inner functions
clay austin
committed
Merge branch 'develop' of github.com:USGS-EROS/lcmap-pyccd into topic/ca_timing
clay austin
committed