jun2015lgl -- Support scripts for "Evidence for Retrovirus Expression in LGL Leukemia"

Aug/1/2015, Bob Harris (rsharris at bx dot psu dot edu)

Name	Name	Last commit message	Last commit date
Latest commit rsharris adding example job scripts Sep 27, 2016 2f938e8 · Sep 27, 2016 History 6 Commits
chrom_avg	chrom_avg	initial import into github	Aug 1, 2015
encodachrom	encodachrom	initial import into github	Aug 1, 2015
LICENSE	LICENSE	Initial commit	Aug 1, 2015
README.md	README.md	initial readme text added	Aug 1, 2015
S1.called_insertions.sh	S1.called_insertions.sh	adding example job scripts	Sep 27, 2016
S1_LGL_MP.discordant_mates_dense.sh	S1_LGL_MP.discordant_mates_dense.sh	adding example job scripts	Sep 27, 2016
S1_LGL_MP.insert_depth.normal.sh	S1_LGL_MP.insert_depth.normal.sh	adding example job scripts	Sep 27, 2016
S1_LGL_MP.insert_depth.short.sh	S1_LGL_MP.insert_depth.short.sh	adding example job scripts	Sep 27, 2016
S1_LGL_MP.insert_depth_dense.sh	S1_LGL_MP.insert_depth_dense.sh	adding example job scripts	Sep 27, 2016
S1_LGL_MP.insert_depth_sparse.sh	S1_LGL_MP.insert_depth_sparse.sh	adding example job scripts	Sep 27, 2016
S1_LGL_MP.insert_length.sh	S1_LGL_MP.insert_length.sh	adding example job scripts	Sep 27, 2016
S1_LGL_MP.insert_length_sparse.sh	S1_LGL_MP.insert_length_sparse.sh	adding example job scripts	Sep 27, 2016
S1_LGL_MP.insert_length_sparse_or_normal_inserts_sparse.sh	S1_LGL_MP.insert_length_sparse_or_normal_inserts_sparse.sh	adding example job scripts	Sep 27, 2016
S1_LGL_MP.short_or_discordant.sh	S1_LGL_MP.short_or_discordant.sh	adding example job scripts	Sep 27, 2016
close_intervals.py	close_intervals.py	initial import into github	Aug 1, 2015
collect_tags.py	collect_tags.py	minor updates to support scripts	Sep 27, 2016
control.dat	control.dat	adding job-building scripts	Sep 27, 2016
create_script_call_insertions_discordant.py	create_script_call_insertions_discordant.py	adding job-building scripts	Sep 27, 2016
create_script_depth.py	create_script_depth.py	adding job-building scripts	Sep 27, 2016
create_script_discordant_mates_dense.py	create_script_discordant_mates_dense.py	adding job-building scripts	Sep 27, 2016
create_script_insert_depth.py	create_script_insert_depth.py	adding job-building scripts	Sep 27, 2016
create_script_insert_depth_dense.py	create_script_insert_depth_dense.py	adding job-building scripts	Sep 27, 2016
create_script_insert_depth_sparse.py	create_script_insert_depth_sparse.py	adding job-building scripts	Sep 27, 2016
create_script_insert_length.py	create_script_insert_length.py	adding job-building scripts	Sep 27, 2016
create_script_insert_length_sparse.py	create_script_insert_length_sparse.py	adding job-building scripts	Sep 27, 2016
create_script_insert_length_sparse_or_normal_inserts_sparse.py	create_script_insert_length_sparse_or_normal_inserts_sparse.py	adding job-building scripts	Sep 27, 2016
create_script_short_or_discordant.py	create_script_short_or_discordant.py	adding job-building scripts	Sep 27, 2016
fill_genomic_interval_gaps.py	fill_genomic_interval_gaps.py	initial import into github	Aug 1, 2015
filtered_sam_to_intervals.py	filtered_sam_to_intervals.py	minor updates to support scripts	Sep 27, 2016
intervals_to_ucsc_catalog.py	intervals_to_ucsc_catalog.py	minor updates to support scripts	Sep 27, 2016
keep_first.py	keep_first.py	minor updates to support scripts	Sep 27, 2016
make_bigwig_info.py	make_bigwig_info.py	initial import into github	Aug 1, 2015
make_bwa_jobs.py	make_bwa_jobs.py	adding job-building scripts	Sep 27, 2016
proximal_feature_intervals.py	proximal_feature_intervals.py	minor updates to support scripts	Sep 27, 2016
sam_reader.py	sam_reader.py	initial import into github	Aug 1, 2015

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