Usage instructions

src/pyskindose/__init__.py

@@ -5,3 +5,37 @@
 from .phantom_class import Phantom
 from pyskindose.plotting import plot_geometry
 from .analyze_data import analyze_data
+from .settings import PyskindoseSettings
+
+
+def load_settings_example_json() -> dict:
+    import json
+    from pathlib import Path
+
+    return json.loads((Path(__file__).parent / 'settings_example.json').read_text())
+
+
+def print_available_human_phantoms():
+    from pathlib import Path
+    phantom_data_dir = Path(__file__).parent / 'phantom_data'
+    phantoms = [phantom.stem for phantom in phantom_data_dir.glob('*.stl') if not phantom.stem.endswith('reduced_1000t')]
+
+    for phantom in phantoms:
+        print(phantom)
+
+
+def print_example_rdsr_files():
+    rdsr_data_dir = get_path_to_example_rdsr_files()
+    files = [file.name for file in rdsr_data_dir.glob('*.dcm')]
+
+    print('Available RDSR files:\n')
+    for filename in files:
+        print(f'\t{filename}')
+
+    print(f'\nFiles located in {rdsr_data_dir.absolute()}')
+
+
+def get_path_to_example_rdsr_files():
+    from pathlib import Path
+    return Path(__file__).parent / 'example_data' / 'RDSR'
+

src/pyskindose/constants.py

@@ -195,8 +195,11 @@
 
 PLOT_ZERO_LINE_WIDTH = 5
 
-PLOT_HEIGHT_NOTEBOOK = 800
-PLOT_WIDTH_NOTEBOOK = None
+# PLOT_HEIGHT_NOTEBOOK = 800
+# PLOT_WIDTH_NOTEBOOK = None
+PLOT_HEIGHT_NOTEBOOK = 900
+PLOT_WIDTH_NOTEBOOK = 600
+
 
 PLOT_HEIGHT = None
 PLOT_WIDTH = None