💻
Hacking away
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Karolinska University Hospital
- Stockholm
- @shl@genomic.social
- @smllmp
- in/smllmp
- https://livesys.se
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scipipe/scipipe
scipipe/scipipe PublicRobust, flexible and resource-efficient pipelines using Go and the commandline
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pharmbio/sciluigi
pharmbio/sciluigi PublicA light-weight wrapper library around Spotify's Luigi workflow library to make writing scientific workflows more fluent, flexible and modular
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flowbase/flowbase
flowbase/flowbase PublicA Flow-based Programming inspired micro-framework / un-framework for Go (Golang)
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rdfio/RDFIO
rdfio/RDFIO PublicRDF triples import, export and PHP SPARQL endpoint for Semantic MediaWiki
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rdfio/rdf2smw
rdfio/rdf2smw PublicConvert RDF to Semantic MediaWiki facts in MediaWiki XML format, with a standalone commandline tool
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gccontent-benchmark
gccontent-benchmark PublicBenchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)
272 contributions in the last year
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Activity overview
Contributed to
Clinical-Genomics/microSALT,
livingsys/livingsys.github.io,
samuell/fastxviz
and 66 other
repositories
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Contribution activity
March 2025
Created 3 commits in 2 repositories
Created 1 repository
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samuell/awesome-bioinformatics-education-fork
This contribution was made on Mar 5
Opened 7 pull requests in 3 repositories
lskatz/awesome-bioinformatics-education
5
open
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Add Introduction to Bioinformatics in Microbiology
This contribution was made on Mar 5
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Add sandbox.bio
This contribution was made on Mar 5
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Add two hands on genomic data analysis books
This contribution was made on Mar 5
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Fix broken link to Ben Langmead's teaching materials
This contribution was made on Mar 5
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Add the general bioinformatics specializations from Coursera
This contribution was made on Mar 5
nf-core/modules
1
merged
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Make arg parsing regex in seaqtk sample more specific avoiding spurious matches
This contribution was made on Mar 20
genomic-medicine-sweden/gms_16S
1
merged
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Adjust GHA settings to run on every push
This contribution was made on Mar 4
Reviewed 4 pull requests in 3 repositories
genomic-medicine-sweden/gms_16S
2 pull requests
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Add seqtk
This contribution was made on Mar 20
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Add prefix to master html
This contribution was made on Mar 17
Clinical-Genomics/microSALT
1 pull request
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Add referencer utilities and constants for Enterobacteriaceae
This contribution was made on Mar 19
genomic-medicine-sweden/jasen
1 pull request
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Spyogenes updates
This contribution was made on Mar 17
Opened 1 issue in 1 repository
StevenMaude/epo-bin
1
open
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Thank you!
This contribution was made on Mar 14