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12 Open 16 Closed
12 Open 16 Closed
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Issues list

Re-write pipeline enhancement New feature or request
#74 opened Mar 24, 2025 by DLBPointon
@DLBPointon
Currently two SAMTOOLS_FAIDX are in use, adapt for 1 enhancement New feature or request Pipeline Pipeline wide effecting work
#64 opened Mar 4, 2025 by DLBPointon
Ensure the pipeline runs on AWS accessible data enhancement New feature or request Pipeline Pipeline wide effecting work WAIT
#63 opened Mar 4, 2025 by DLBPointon
1
Update GENERATE_CRAM_CSV to samtools 1.20 enhancement New feature or request Module Module effecting work
#62 opened Mar 3, 2025 by DLBPointon
1
Template Update to 3.0 enhancement New feature or request Pipeline Pipeline wide effecting work
#61 opened Feb 28, 2025 by DLBPointon
1
ERROR ~ Execution aborted due to an unexpected error - Check script bug Something isn't working
#44 opened Dec 4, 2024 by Surbhigrewal
Failed to pull singularity image bug Something isn't working
#43 opened Nov 19, 2024 by ilenia6
@DLBPointon
9
Adding BIN format to allow for rebuilding pretext without re-mapping everytime enhancement New feature or request
#36 opened Sep 25, 2024 by DLBPointon
@DLBPointon
Output dir needed to have a default value enhancement New feature or request
#32 opened Jul 23, 2024 by DLBPointon
Ensure s3 paths work enhancement New feature or request
#31 opened Jul 18, 2024 by DLBPointon
Workflows Hub 1.0.0 addition Getting ready for v1 release enhancement New feature or request
#24 opened Jul 8, 2024 by DLBPointon
@DLBPointon
Make the test profile independent from GitHub/Sanger 1.1.0 addition enhancement New feature or request
#22 opened Jul 4, 2024 by muffato
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