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DLBPointon committed Feb 12, 2025
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18 changes: 10 additions & 8 deletions CHANGELOG.md
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Expand Up @@ -5,15 +5,17 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
Naming based on: [Audiologists](https://en.wikipedia.org/wiki/Category:Audiologists).

## v0.7.0 - Raymond Carhart [12/02/2025]
- Removing the mapping subworkflow as it is no longer needed.
- This was a requirement before BLOBTOOLKIT implemented it's own mapping subworkflow.
- This significantly speeds up the pipeline in two ways.
- We no longer have to wait for mapping to complete prior to BTK.
- BTK doesn't have to struggle with the much larger mapped bam that was being created.
- NF-TEST implementation.
- We have implemented an output file sanity check rather than rely soley on pipeline completion.

- Removing the mapping subworkflow as it is no longer needed.
- This was a requirement before BLOBTOOLKIT implemented it's own mapping subworkflow.
- This significantly speeds up the pipeline in two ways.
- We no longer have to wait for mapping to complete prior to BTK.
- BTK doesn't have to struggle with the much larger mapped bam that was being created.
- NF-TEST implementation.
- We have implemented an output file sanity check rather than rely soley on pipeline completion.

### Software dependencies

No Software updates

### Parameters
Expand All @@ -23,10 +25,10 @@ No Software updates
| --mapped | |

### KNOWN BUG

- BLOBTOOLKIT relies on BUSCO 5.5, which does NOT run with single line fasta!
- This needs to be folded, use `seqkit seq -l 70`


## v0.6.2 - Robert Beiny H2 [09/01/2025]

- Modules have been updated to remove conda defaults.
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14 changes: 7 additions & 7 deletions nextflow.config
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Expand Up @@ -219,20 +219,20 @@ manifest {
contributors = [
// TODO nf-core: Update the field with the details of the contributors to your pipeline. New with Nextflow version 24.10.0
[
name: 'DLBPointon',
affiliation: '',
email: '',
github: '',
contribution: [], // List of contribution types ('author', 'maintainer' or 'contributor')
orcid: ''
name: 'Damon-Lee B Pointon',
affiliation: 'Wellcome Genome Campus, Sanger',
email: '[email protected]',
github: 'DLBPointon',
contribution: ['author', 'maintainer'], // List of contribution types ('author', 'maintainer' or 'contributor')
orcid: '0000-0003-2949-6719'
],
]
homePage = 'https://github.com/sanger-tol/ear'
description = """ERGA Assembly Report pipeline"""
mainScript = 'main.nf'
defaultBranch = 'main'
nextflowVersion = '!>=24.04.2'
version = '0.6.2'
version = '0.7.0'
doi = 'https://zenodo.org/records/13819520'
}

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